Coccinia mosaic Virudhunagar virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; unclassified Begomovirus

Average proteome isoelectric point is 7.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D1P856|A0A2D1P856_9GEMI Replication enhancer protein OS=Coccinia mosaic Virudhunagar virus OX=2048880 PE=3 SV=1
MM1 pKa = 7.57WARR4 pKa = 11.84SLGTHH9 pKa = 6.76NYY11 pKa = 10.22LCGHH15 pKa = 7.39LDD17 pKa = 4.41LSPKK21 pKa = 10.0IYY23 pKa = 11.0SNDD26 pKa = 2.4AWYY29 pKa = 10.92NVIDD33 pKa = 5.2DD34 pKa = 4.41VDD36 pKa = 3.61PHH38 pKa = 5.85YY39 pKa = 11.0LKK41 pKa = 10.7HH42 pKa = 6.2FKK44 pKa = 10.7EE45 pKa = 4.46FMGAQRR51 pKa = 11.84DD52 pKa = 3.81WQSNTKK58 pKa = 9.55YY59 pKa = 10.51GKK61 pKa = 9.02PVHH64 pKa = 6.47IKK66 pKa = 10.76GGIPTIFLCNPGPSSSYY83 pKa = 10.22IEE85 pKa = 4.02YY86 pKa = 10.9LEE88 pKa = 4.18EE89 pKa = 4.03EE90 pKa = 4.33KK91 pKa = 11.12NAALKK96 pKa = 10.42AWALKK101 pKa = 9.94NALFITLEE109 pKa = 4.31GPLYY113 pKa = 10.98SGGNQGATPEE123 pKa = 4.23EE124 pKa = 4.59QEE126 pKa = 4.64SNPTQADD133 pKa = 3.14

Molecular weight: 14.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D1P853|A0A2D1P853_9GEMI Protein V2 OS=Coccinia mosaic Virudhunagar virus OX=2048880 PE=3 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.87IIISTPASKK16 pKa = 10.49ARR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 2.97RR25 pKa = 11.84PYY27 pKa = 10.5AARR30 pKa = 11.84AVVPIVRR37 pKa = 11.84GTKK40 pKa = 9.74ARR42 pKa = 11.84VWANRR47 pKa = 11.84PMNRR51 pKa = 11.84KK52 pKa = 8.06PRR54 pKa = 11.84IYY56 pKa = 10.77RR57 pKa = 11.84MFRR60 pKa = 11.84SPDD63 pKa = 3.23VPRR66 pKa = 11.84GCEE69 pKa = 4.34GPCKK73 pKa = 10.01VQSFEE78 pKa = 4.06SRR80 pKa = 11.84HH81 pKa = 5.47DD82 pKa = 3.38VAHH85 pKa = 6.87IGKK88 pKa = 9.09VMCVSDD94 pKa = 3.59VTRR97 pKa = 11.84GTGLTHH103 pKa = 7.09RR104 pKa = 11.84VGKK107 pKa = 9.66RR108 pKa = 11.84FCVKK112 pKa = 9.94SVYY115 pKa = 10.62VLGKK119 pKa = 9.71VWMDD123 pKa = 3.25EE124 pKa = 4.06NIKK127 pKa = 9.31TKK129 pKa = 10.61NHH131 pKa = 6.03TNTVMFFLVRR141 pKa = 11.84DD142 pKa = 3.75RR143 pKa = 11.84RR144 pKa = 11.84PIDD147 pKa = 3.32KK148 pKa = 9.56PQDD151 pKa = 3.39FGEE154 pKa = 4.33VFNMFDD160 pKa = 4.29NEE162 pKa = 4.11PSTATVKK169 pKa = 10.61NMHH172 pKa = 7.0RR173 pKa = 11.84DD174 pKa = 3.31RR175 pKa = 11.84YY176 pKa = 8.78QVLRR180 pKa = 11.84KK181 pKa = 8.43WHH183 pKa = 5.6ATVTGGTYY191 pKa = 10.43ACRR194 pKa = 11.84EE195 pKa = 3.76QALVRR200 pKa = 11.84KK201 pKa = 8.53FIRR204 pKa = 11.84VNNYY208 pKa = 7.74VVYY211 pKa = 9.96NQQEE215 pKa = 3.8AGKK218 pKa = 10.1YY219 pKa = 8.23EE220 pKa = 4.02NHH222 pKa = 6.47TEE224 pKa = 3.99NALMLYY230 pKa = 8.25MASTHH235 pKa = 6.3ASNPVYY241 pKa = 9.86ATLKK245 pKa = 9.47IRR247 pKa = 11.84IYY249 pKa = 10.67FYY251 pKa = 11.26DD252 pKa = 3.51SVSNN256 pKa = 3.9

Molecular weight: 29.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1019

85

256

145.6

16.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.888 ± 0.558

2.552 ± 0.518

4.907 ± 0.393

4.318 ± 0.501

3.533 ± 0.693

5.496 ± 0.646

4.809 ± 0.871

4.514 ± 0.618

4.612 ± 0.966

7.655 ± 1.237

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.65 ± 0.493

4.809 ± 0.773

6.281 ± 0.671

3.827 ± 0.58

7.655 ± 1.02

7.066 ± 1.383

6.575 ± 1.081

7.458 ± 1.022

1.57 ± 0.314

3.827 ± 0.723
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski