Actinocorallia herbida

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptosporangiales; Thermomonosporaceae; Actinocorallia

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8804 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N1CUK6|A0A3N1CUK6_9ACTN Uncharacterized protein (TIGR03086 family) OS=Actinocorallia herbida OX=58109 GN=EDD29_1911 PE=4 SV=1
MM1 pKa = 7.76SEE3 pKa = 3.88VTEE6 pKa = 4.76PYY8 pKa = 9.67ATGTPCWVDD17 pKa = 5.27LMAKK21 pKa = 9.66DD22 pKa = 3.44QQAALDD28 pKa = 4.32FYY30 pKa = 11.44RR31 pKa = 11.84EE32 pKa = 3.89LLGWQGEE39 pKa = 4.15IGPAEE44 pKa = 3.91FGGYY48 pKa = 7.0TVCEE52 pKa = 4.03LNGRR56 pKa = 11.84AVAGIAPTMAPEE68 pKa = 4.73GASEE72 pKa = 4.62PPTVWTNYY80 pKa = 9.97LSSTDD85 pKa = 3.47AQATQDD91 pKa = 4.1AIVAAGGLLIAPVMDD106 pKa = 3.62VGSLGRR112 pKa = 11.84MLVAADD118 pKa = 3.47PQGAVFGVWEE128 pKa = 4.23ARR130 pKa = 11.84DD131 pKa = 3.4FAGAQVVNEE140 pKa = 4.15AGALVWNEE148 pKa = 3.96LHH150 pKa = 6.67TDD152 pKa = 4.84DD153 pKa = 5.53IPGATAFYY161 pKa = 11.25AEE163 pKa = 4.67AFDD166 pKa = 5.55LRR168 pKa = 11.84IKK170 pKa = 10.4PMEE173 pKa = 4.3GAEE176 pKa = 4.52PYY178 pKa = 10.52CEE180 pKa = 4.56LRR182 pKa = 11.84VGDD185 pKa = 3.86QCVGGATHH193 pKa = 7.61LAADD197 pKa = 3.94PPGTPSHH204 pKa = 6.55WLTYY208 pKa = 9.87FAVDD212 pKa = 4.62DD213 pKa = 3.99VDD215 pKa = 5.01ASVDD219 pKa = 3.4TLLEE223 pKa = 4.23HH224 pKa = 6.91GGTVLAPPFDD234 pKa = 4.49MIAGRR239 pKa = 11.84MTVVTDD245 pKa = 3.61PQGAPFALINPTPMM259 pKa = 4.56

Molecular weight: 27.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N1DB48|A0A3N1DB48_9ACTN Aryl-alcohol dehydrogenase-like predicted oxidoreductase OS=Actinocorallia herbida OX=58109 GN=EDD29_8491 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84HH14 pKa = 5.34KK15 pKa = 10.47KK16 pKa = 8.84HH17 pKa = 5.5GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGQAILAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.43GRR40 pKa = 11.84ARR42 pKa = 11.84VAVV45 pKa = 3.65

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8804

0

8804

2882551

29

6424

327.4

34.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.997 ± 0.038

0.767 ± 0.007

5.932 ± 0.021

5.746 ± 0.023

2.97 ± 0.014

9.506 ± 0.023

2.2 ± 0.013

3.443 ± 0.02

2.068 ± 0.02

10.743 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.723 ± 0.012

1.64 ± 0.014

6.213 ± 0.027

2.379 ± 0.014

7.961 ± 0.028

4.85 ± 0.019

5.861 ± 0.021

8.472 ± 0.025

1.518 ± 0.011

2.009 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski