Cadophora sp. DSE1049

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Leotiomycetes; Helotiales; Helotiales incertae sedis; Cadophora; unclassified Cadophora

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 22755 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2V1BVC4|A0A2V1BVC4_9HELO Protein kinase domain-containing protein OS=Cadophora sp. DSE1049 OX=1485229 GN=DL98DRAFT_656798 PE=4 SV=1
MM1 pKa = 7.02QLKK4 pKa = 10.04NLLPAALVAGAAAQSLTDD22 pKa = 3.86VLAANNDD29 pKa = 3.99TLSSLTSLISADD41 pKa = 3.7PALLEE46 pKa = 4.26ALGGASNITILAPSNDD62 pKa = 3.18ALAAFLNSTAGAAAATDD79 pKa = 4.1PGAVAALITYY89 pKa = 9.36HH90 pKa = 6.01VLNGTYY96 pKa = 9.42PASAFTNTSQFIPTLLSNSSYY117 pKa = 11.66SNVTGGQVVEE127 pKa = 3.85ARR129 pKa = 11.84LRR131 pKa = 11.84GEE133 pKa = 3.88TASIFTGLLSASNVSVANVNFTGGVVHH160 pKa = 7.04VIDD163 pKa = 4.41SVLTVPQSASNTAGALNLTSLAGALTSADD192 pKa = 3.28LVEE195 pKa = 4.56TVDD198 pKa = 3.83GLSDD202 pKa = 3.41VTIFAPSNEE211 pKa = 3.86AFQAIGSALPNLSTEE226 pKa = 4.28ALSSILTYY234 pKa = 10.5HH235 pKa = 6.04VVQGTVGYY243 pKa = 10.67SSILTNTTLEE253 pKa = 4.44TVNGEE258 pKa = 4.24SVTISIVNGTVYY270 pKa = 10.8VNSAMVTIPDD280 pKa = 3.45ILIAGGVVHH289 pKa = 7.07VIDD292 pKa = 5.5SVLNPNNTSAAPPTAGATTTTPAFTGASSATDD324 pKa = 3.36VPFTSGVSASTTVTSVPTRR343 pKa = 11.84DD344 pKa = 3.61PEE346 pKa = 4.2ATSTSTAGAAPLQTGMIGLGALFGGAALVMGNLL379 pKa = 3.8

Molecular weight: 37.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2V1C141|A0A2V1C141_9HELO Uncharacterized protein OS=Cadophora sp. DSE1049 OX=1485229 GN=DL98DRAFT_590024 PE=4 SV=1
MM1 pKa = 7.25QSHH4 pKa = 5.45KK5 pKa = 8.84TFRR8 pKa = 11.84TKK10 pKa = 10.69VKK12 pKa = 10.16LARR15 pKa = 11.84AQKK18 pKa = 9.1QNRR21 pKa = 11.84PIPQWIRR28 pKa = 11.84LRR30 pKa = 11.84TGNTIRR36 pKa = 11.84YY37 pKa = 5.79NAKK40 pKa = 8.89RR41 pKa = 11.84RR42 pKa = 11.84HH43 pKa = 4.15WRR45 pKa = 11.84KK46 pKa = 7.38TRR48 pKa = 11.84IGII51 pKa = 4.0

Molecular weight: 6.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

22755

0

22755

9288616

49

7844

408.2

45.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.109 ± 0.014

1.396 ± 0.007

5.461 ± 0.014

6.094 ± 0.017

3.968 ± 0.01

6.976 ± 0.017

2.298 ± 0.007

5.334 ± 0.01

5.033 ± 0.018

8.962 ± 0.017

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.236 ± 0.006

3.826 ± 0.01

5.743 ± 0.016

3.805 ± 0.011

5.735 ± 0.014

8.324 ± 0.017

6.102 ± 0.012

6.123 ± 0.011

1.588 ± 0.006

2.888 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski