Bacteroides stercoris

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae;

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3155 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A108TAS8|A0A108TAS8_BACSE Trk system potassium uptake protein TrkA OS=Bacteroides stercoris OX=46506 GN=trkA PE=4 SV=1
MM1 pKa = 7.32GLEE4 pKa = 5.16DD5 pKa = 5.97DD6 pKa = 4.6FLKK9 pKa = 11.1NDD11 pKa = 4.18LDD13 pKa = 4.02DD14 pKa = 4.52EE15 pKa = 4.42KK16 pKa = 10.6TIEE19 pKa = 4.18YY20 pKa = 9.37IKK22 pKa = 10.96NYY24 pKa = 9.95LPQEE28 pKa = 4.16LKK30 pKa = 10.91EE31 pKa = 4.3KK32 pKa = 10.78FSDD35 pKa = 3.62DD36 pKa = 3.07EE37 pKa = 4.59FYY39 pKa = 11.59YY40 pKa = 10.87FLDD43 pKa = 5.8LIDD46 pKa = 4.53EE47 pKa = 4.8YY48 pKa = 11.34YY49 pKa = 10.34SEE51 pKa = 5.1SGILDD56 pKa = 3.6VQPDD60 pKa = 3.61GDD62 pKa = 4.32GYY64 pKa = 10.85IEE66 pKa = 4.74IDD68 pKa = 3.09LGKK71 pKa = 10.24IVDD74 pKa = 4.12YY75 pKa = 10.58IIKK78 pKa = 9.46EE79 pKa = 3.92AHH81 pKa = 6.35KK82 pKa = 10.98DD83 pKa = 3.53EE84 pKa = 4.7MGDD87 pKa = 3.65YY88 pKa = 11.01DD89 pKa = 4.15PDD91 pKa = 4.14EE92 pKa = 4.41ILFIVQGEE100 pKa = 4.27MEE102 pKa = 4.35YY103 pKa = 10.46TEE105 pKa = 4.41SLEE108 pKa = 5.06DD109 pKa = 3.48EE110 pKa = 4.5

Molecular weight: 13.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A120A0X1|A0A120A0X1_BACSE AAA-like domain protein OS=Bacteroides stercoris OX=46506 GN=AA415_02743 PE=4 SV=1
MM1 pKa = 7.71LIAHH5 pKa = 6.26CQFLLFSSVLLAFFLCPTPGCRR27 pKa = 11.84AYY29 pKa = 10.57RR30 pKa = 11.84DD31 pKa = 3.56PGVRR35 pKa = 11.84RR36 pKa = 11.84AEE38 pKa = 3.92TRR40 pKa = 11.84MSDD43 pKa = 3.26MSRR46 pKa = 11.84PGCHH50 pKa = 6.58AMPFRR55 pKa = 11.84ISVFSFSLPLFLSARR70 pKa = 11.84MRR72 pKa = 11.84IYY74 pKa = 11.19YY75 pKa = 9.7NVSLLPGFPSSLKK88 pKa = 10.92NMFFNIFVNQRR99 pKa = 11.84FIKK102 pKa = 9.51MFKK105 pKa = 10.35RR106 pKa = 11.84NAKK109 pKa = 8.97KK110 pKa = 9.93SPYY113 pKa = 9.4IFGVYY118 pKa = 9.55VIKK121 pKa = 10.68SYY123 pKa = 10.57FCTRR127 pKa = 11.84FRR129 pKa = 11.84EE130 pKa = 4.12RR131 pKa = 11.84EE132 pKa = 3.84QRR134 pKa = 11.84CFDD137 pKa = 3.58ILTGTVV143 pKa = 2.92

Molecular weight: 16.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3155

0

3155

1141124

50

1938

361.7

40.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.453 ± 0.044

1.283 ± 0.016

5.502 ± 0.029

6.577 ± 0.037

4.509 ± 0.025

6.94 ± 0.038

1.87 ± 0.017

6.78 ± 0.037

6.461 ± 0.038

9.168 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.763 ± 0.017

5.022 ± 0.033

3.746 ± 0.022

3.409 ± 0.023

4.81 ± 0.034

5.935 ± 0.035

5.635 ± 0.027

6.521 ± 0.036

1.224 ± 0.016

4.387 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski