Caulobacter phage CcrBL9

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dolichocephalovirinae; Bertelyvirus; Caulobacter virus CcrBL9

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 517 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A385EFM9|A0A385EFM9_9CAUD Uncharacterized protein OS=Caulobacter phage CcrBL9 OX=2283270 GN=CcrBL9_gp455 PE=4 SV=1
MM1 pKa = 7.6AAFLINTDD9 pKa = 3.62LNALVEE15 pKa = 4.87DD16 pKa = 3.62IAYY19 pKa = 9.97DD20 pKa = 3.59VEE22 pKa = 4.4MEE24 pKa = 4.05DD25 pKa = 4.23RR26 pKa = 11.84AAEE29 pKa = 4.1EE30 pKa = 4.09LDD32 pKa = 3.71GMDD35 pKa = 4.79FGDD38 pKa = 3.41RR39 pKa = 11.84CYY41 pKa = 11.1YY42 pKa = 10.57GDD44 pKa = 3.74RR45 pKa = 11.84AYY47 pKa = 10.55HH48 pKa = 5.72GQLEE52 pKa = 4.2LARR55 pKa = 11.84IIEE58 pKa = 4.69AATAAHH64 pKa = 7.29PILYY68 pKa = 10.25AA69 pKa = 4.22

Molecular weight: 7.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A385EB25|A0A385EB25_9CAUD Uncharacterized protein OS=Caulobacter phage CcrBL9 OX=2283270 GN=CcrBL9_gp050c PE=4 SV=1
MM1 pKa = 7.86RR2 pKa = 11.84ARR4 pKa = 11.84LALLLAGVTGALVLSLTRR22 pKa = 11.84PVSARR27 pKa = 11.84TKK29 pKa = 10.28LISLAARR36 pKa = 11.84PPWVGRR42 pKa = 11.84KK43 pKa = 9.64LSVPVV48 pKa = 3.49

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

517

0

517

88936

37

2748

172.0

18.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.924 ± 0.199

0.905 ± 0.056

6.651 ± 0.165

6.264 ± 0.221

3.668 ± 0.082

8.125 ± 0.502

2.256 ± 0.102

5.0 ± 0.097

4.531 ± 0.172

8.337 ± 0.186

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.456 ± 0.09

3.071 ± 0.124

5.069 ± 0.125

3.42 ± 0.103

6.297 ± 0.197

5.06 ± 0.154

6.07 ± 0.203

6.903 ± 0.128

1.788 ± 0.063

3.207 ± 0.091
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski