Amino acid dipepetide frequency for Bovine adenovirus B serotype 3 (BAdV-3) (Mastadenovirus bos3)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
10.226AlaAla: 10.226 ± 1.68
0.868AlaCys: 0.868 ± 0.338
3.859AlaAsp: 3.859 ± 0.717
4.148AlaGlu: 4.148 ± 0.693
3.376AlaPhe: 3.376 ± 0.568
5.209AlaGly: 5.209 ± 1.048
1.833AlaHis: 1.833 ± 0.408
3.28AlaIle: 3.28 ± 0.63
1.447AlaLys: 1.447 ± 0.325
8.489AlaLeu: 8.489 ± 1.155
2.412AlaMet: 2.412 ± 0.459
3.087AlaAsn: 3.087 ± 0.74
5.788AlaPro: 5.788 ± 0.892
3.28AlaGln: 3.28 ± 0.503
4.92AlaArg: 4.92 ± 0.923
6.753AlaSer: 6.753 ± 0.81
4.341AlaThr: 4.341 ± 0.638
5.885AlaVal: 5.885 ± 0.978
0.772AlaTrp: 0.772 ± 0.308
2.315AlaTyr: 2.315 ± 0.575
0.0AlaXaa: 0.0 ± 0.0
Cys
1.447CysAla: 1.447 ± 0.527
0.772CysCys: 0.772 ± 0.34
0.965CysAsp: 0.965 ± 0.365
0.675CysGlu: 0.675 ± 0.263
0.868CysPhe: 0.868 ± 0.263
1.061CysGly: 1.061 ± 0.343
0.772CysHis: 0.772 ± 0.274
0.482CysIle: 0.482 ± 0.296
0.772CysLys: 0.772 ± 0.308
2.605CysLeu: 2.605 ± 0.714
0.193CysMet: 0.193 ± 0.142
0.868CysAsn: 0.868 ± 0.311
1.351CysPro: 1.351 ± 0.417
0.289CysGln: 0.289 ± 0.178
1.254CysArg: 1.254 ± 0.405
1.64CysSer: 1.64 ± 0.487
0.772CysThr: 0.772 ± 0.275
1.254CysVal: 1.254 ± 0.388
0.193CysTrp: 0.193 ± 0.176
1.158CysTyr: 1.158 ± 0.366
0.0CysXaa: 0.0 ± 0.0
Asp
2.991AspAla: 2.991 ± 0.811
0.868AspCys: 0.868 ± 0.354
1.544AspAsp: 1.544 ± 0.571
3.569AspGlu: 3.569 ± 0.481
2.412AspPhe: 2.412 ± 0.436
3.28AspGly: 3.28 ± 0.667
0.868AspHis: 0.868 ± 0.293
2.315AspIle: 2.315 ± 0.46
1.544AspLys: 1.544 ± 0.434
4.245AspLeu: 4.245 ± 0.736
0.965AspMet: 0.965 ± 0.288
2.026AspAsn: 2.026 ± 0.485
3.376AspPro: 3.376 ± 0.511
2.122AspGln: 2.122 ± 0.451
2.894AspArg: 2.894 ± 0.632
3.376AspSer: 3.376 ± 0.556
2.701AspThr: 2.701 ± 0.529
2.991AspVal: 2.991 ± 0.442
0.675AspTrp: 0.675 ± 0.283
2.122AspTyr: 2.122 ± 0.592
0.0AspXaa: 0.0 ± 0.0
Glu
4.823GluAla: 4.823 ± 0.755
1.64GluCys: 1.64 ± 0.401
4.148GluAsp: 4.148 ± 0.641
5.499GluGlu: 5.499 ± 1.001
1.544GluPhe: 1.544 ± 0.323
4.534GluGly: 4.534 ± 0.784
0.868GluHis: 0.868 ± 0.364
1.64GluIle: 1.64 ± 0.38
2.219GluLys: 2.219 ± 0.484
4.438GluLeu: 4.438 ± 0.883
1.64GluMet: 1.64 ± 0.463
2.315GluAsn: 2.315 ± 0.534
3.473GluPro: 3.473 ± 0.919
1.544GluGln: 1.544 ± 0.289
3.955GluArg: 3.955 ± 0.883
2.701GluSer: 2.701 ± 0.438
3.183GluThr: 3.183 ± 0.485
3.183GluVal: 3.183 ± 0.592
0.482GluTrp: 0.482 ± 0.16
0.772GluTyr: 0.772 ± 0.245
0.0GluXaa: 0.0 ± 0.0
Phe
2.219PheAla: 2.219 ± 0.521
0.772PheCys: 0.772 ± 0.252
2.798PheAsp: 2.798 ± 0.45
2.315PheGlu: 2.315 ± 0.501
2.122PhePhe: 2.122 ± 0.427
1.736PheGly: 1.736 ± 0.406
0.965PheHis: 0.965 ± 0.275
1.736PheIle: 1.736 ± 0.426
1.64PheLys: 1.64 ± 0.371
4.438PheLeu: 4.438 ± 0.633
1.254PheMet: 1.254 ± 0.336
2.026PheAsn: 2.026 ± 0.334
2.605PhePro: 2.605 ± 0.572
1.64PheGln: 1.64 ± 0.448
2.412PheArg: 2.412 ± 0.597
3.087PheSer: 3.087 ± 0.516
2.219PheThr: 2.219 ± 0.447
3.183PheVal: 3.183 ± 0.501
0.482PheTrp: 0.482 ± 0.183
1.736PheTyr: 1.736 ± 0.359
0.0PheXaa: 0.0 ± 0.0
Gly
5.209GlyAla: 5.209 ± 0.764
1.061GlyCys: 1.061 ± 0.336
3.376GlyAsp: 3.376 ± 0.522
2.412GlyGlu: 2.412 ± 0.597
2.026GlyPhe: 2.026 ± 0.374
4.148GlyGly: 4.148 ± 0.85
1.254GlyHis: 1.254 ± 0.354
3.087GlyIle: 3.087 ± 0.541
1.544GlyLys: 1.544 ± 0.525
7.332GlyLeu: 7.332 ± 2.743
0.965GlyMet: 0.965 ± 0.389
3.569GlyAsn: 3.569 ± 0.76
4.052GlyPro: 4.052 ± 1.037
2.798GlyGln: 2.798 ± 0.888
5.016GlyArg: 5.016 ± 0.713
5.499GlySer: 5.499 ± 0.676
4.341GlyThr: 4.341 ± 0.661
3.955GlyVal: 3.955 ± 0.919
0.579GlyTrp: 0.579 ± 0.217
1.351GlyTyr: 1.351 ± 0.338
0.0GlyXaa: 0.0 ± 0.0
His
2.315HisAla: 2.315 ± 0.616
0.579HisCys: 0.579 ± 0.24
0.675HisAsp: 0.675 ± 0.248
1.254HisGlu: 1.254 ± 0.381
1.254HisPhe: 1.254 ± 0.323
2.315HisGly: 2.315 ± 0.335
0.675HisHis: 0.675 ± 0.349
1.254HisIle: 1.254 ± 0.349
0.482HisLys: 0.482 ± 0.213
2.315HisLeu: 2.315 ± 0.521
0.289HisMet: 0.289 ± 0.159
1.254HisAsn: 1.254 ± 0.365
1.736HisPro: 1.736 ± 0.447
0.772HisGln: 0.772 ± 0.298
2.026HisArg: 2.026 ± 0.408
1.736HisSer: 1.736 ± 0.382
0.965HisThr: 0.965 ± 0.373
1.447HisVal: 1.447 ± 0.393
0.482HisTrp: 0.482 ± 0.19
0.675HisTyr: 0.675 ± 0.218
0.0HisXaa: 0.0 ± 0.0
Ile
2.605IleAla: 2.605 ± 0.467
0.579IleCys: 0.579 ± 0.251
2.026IleAsp: 2.026 ± 0.443
1.64IleGlu: 1.64 ± 0.407
1.736IlePhe: 1.736 ± 0.335
2.122IleGly: 2.122 ± 0.491
1.061IleHis: 1.061 ± 0.313
1.158IleIle: 1.158 ± 0.437
1.544IleLys: 1.544 ± 0.446
2.894IleLeu: 2.894 ± 0.397
1.158IleMet: 1.158 ± 0.345
1.544IleAsn: 1.544 ± 0.528
2.894IlePro: 2.894 ± 0.631
1.929IleGln: 1.929 ± 0.505
3.376IleArg: 3.376 ± 0.671
3.376IleSer: 3.376 ± 0.407
2.798IleThr: 2.798 ± 0.47
2.605IleVal: 2.605 ± 0.508
0.289IleTrp: 0.289 ± 0.158
1.544IleTyr: 1.544 ± 0.409
0.0IleXaa: 0.0 ± 0.0
Lys
1.736LysAla: 1.736 ± 0.449
0.579LysCys: 0.579 ± 0.276
1.64LysAsp: 1.64 ± 0.317
1.736LysGlu: 1.736 ± 0.371
1.351LysPhe: 1.351 ± 0.508
1.736LysGly: 1.736 ± 0.56
0.675LysHis: 0.675 ± 0.276
2.508LysIle: 2.508 ± 0.506
1.544LysLys: 1.544 ± 0.509
3.473LysLeu: 3.473 ± 0.711
0.675LysMet: 0.675 ± 0.28
1.061LysAsn: 1.061 ± 0.338
2.894LysPro: 2.894 ± 0.71
1.929LysGln: 1.929 ± 0.603
2.991LysArg: 2.991 ± 0.885
2.412LysSer: 2.412 ± 0.606
1.736LysThr: 1.736 ± 0.54
3.376LysVal: 3.376 ± 0.583
0.193LysTrp: 0.193 ± 0.115
0.579LysTyr: 0.579 ± 0.187
0.0LysXaa: 0.0 ± 0.0
Leu
7.042LeuAla: 7.042 ± 0.944
1.929LeuCys: 1.929 ± 0.569
3.473LeuAsp: 3.473 ± 0.592
5.209LeuGlu: 5.209 ± 0.655
2.798LeuPhe: 2.798 ± 0.566
7.718LeuGly: 7.718 ± 1.361
3.183LeuHis: 3.183 ± 0.74
3.666LeuIle: 3.666 ± 0.77
4.438LeuLys: 4.438 ± 0.821
9.068LeuLeu: 9.068 ± 1.205
2.315LeuMet: 2.315 ± 0.493
4.92LeuAsn: 4.92 ± 0.988
7.235LeuPro: 7.235 ± 1.052
5.113LeuGln: 5.113 ± 1.008
6.849LeuArg: 6.849 ± 1.219
7.235LeuSer: 7.235 ± 0.916
7.332LeuThr: 7.332 ± 1.559
5.113LeuVal: 5.113 ± 0.834
1.736LeuTrp: 1.736 ± 0.37
2.798LeuTyr: 2.798 ± 0.413
0.0LeuXaa: 0.0 ± 0.0
Met
2.412MetAla: 2.412 ± 0.458
0.772MetCys: 0.772 ± 0.287
1.544MetAsp: 1.544 ± 0.328
1.158MetGlu: 1.158 ± 0.249
0.772MetPhe: 0.772 ± 0.249
0.965MetGly: 0.965 ± 0.314
0.965MetHis: 0.965 ± 0.328
0.965MetIle: 0.965 ± 0.333
0.579MetLys: 0.579 ± 0.226
2.508MetLeu: 2.508 ± 0.397
0.289MetMet: 0.289 ± 0.151
0.965MetAsn: 0.965 ± 0.33
1.254MetPro: 1.254 ± 0.399
0.675MetGln: 0.675 ± 0.259
0.965MetArg: 0.965 ± 0.358
1.447MetSer: 1.447 ± 0.366
0.772MetThr: 0.772 ± 0.222
0.965MetVal: 0.965 ± 0.223
0.289MetTrp: 0.289 ± 0.138
0.965MetTyr: 0.965 ± 0.328
0.0MetXaa: 0.0 ± 0.0
Asn
2.894AsnAla: 2.894 ± 0.608
0.386AsnCys: 0.386 ± 0.196
1.736AsnAsp: 1.736 ± 0.493
2.315AsnGlu: 2.315 ± 0.361
2.026AsnPhe: 2.026 ± 0.425
2.412AsnGly: 2.412 ± 0.822
0.868AsnHis: 0.868 ± 0.277
2.508AsnIle: 2.508 ± 0.362
1.833AsnLys: 1.833 ± 0.442
4.631AsnLeu: 4.631 ± 0.863
1.158AsnMet: 1.158 ± 0.358
2.701AsnAsn: 2.701 ± 0.623
3.376AsnPro: 3.376 ± 0.469
2.122AsnGln: 2.122 ± 0.725
3.28AsnArg: 3.28 ± 0.561
3.376AsnSer: 3.376 ± 0.52
2.315AsnThr: 2.315 ± 0.568
2.508AsnVal: 2.508 ± 0.459
0.482AsnTrp: 0.482 ± 0.178
1.736AsnTyr: 1.736 ± 0.427
0.0AsnXaa: 0.0 ± 0.0
Pro
6.656ProAla: 6.656 ± 0.92
0.772ProCys: 0.772 ± 0.282
2.412ProAsp: 2.412 ± 0.553
4.245ProGlu: 4.245 ± 0.876
2.315ProPhe: 2.315 ± 0.611
4.534ProGly: 4.534 ± 1.123
1.158ProHis: 1.158 ± 0.269
2.026ProIle: 2.026 ± 0.387
1.544ProLys: 1.544 ± 0.502
6.27ProLeu: 6.27 ± 0.89
1.158ProMet: 1.158 ± 0.361
2.508ProAsn: 2.508 ± 0.644
7.525ProPro: 7.525 ± 1.251
3.569ProGln: 3.569 ± 0.514
4.727ProArg: 4.727 ± 0.761
5.692ProSer: 5.692 ± 0.829
5.113ProThr: 5.113 ± 1.049
4.438ProVal: 4.438 ± 0.874
0.675ProTrp: 0.675 ± 0.306
2.122ProTyr: 2.122 ± 0.571
0.0ProXaa: 0.0 ± 0.0
Gln
4.727GlnAla: 4.727 ± 0.827
1.061GlnCys: 1.061 ± 0.391
1.447GlnAsp: 1.447 ± 0.326
2.894GlnGlu: 2.894 ± 0.802
1.544GlnPhe: 1.544 ± 0.345
2.508GlnGly: 2.508 ± 0.708
1.061GlnHis: 1.061 ± 0.246
1.544GlnIle: 1.544 ± 0.393
1.544GlnLys: 1.544 ± 0.455
4.823GlnLeu: 4.823 ± 0.563
0.965GlnMet: 0.965 ± 0.244
2.026GlnAsn: 2.026 ± 0.366
2.894GlnPro: 2.894 ± 0.47
2.219GlnGln: 2.219 ± 0.473
3.859GlnArg: 3.859 ± 0.657
2.894GlnSer: 2.894 ± 0.501
2.508GlnThr: 2.508 ± 0.4
2.605GlnVal: 2.605 ± 0.506
0.772GlnTrp: 0.772 ± 0.221
1.158GlnTyr: 1.158 ± 0.283
0.0GlnXaa: 0.0 ± 0.0
Arg
6.367ArgAla: 6.367 ± 1.045
2.026ArgCys: 2.026 ± 0.536
3.28ArgAsp: 3.28 ± 0.454
3.666ArgGlu: 3.666 ± 0.715
2.894ArgPhe: 2.894 ± 0.63
5.016ArgGly: 5.016 ± 0.808
1.833ArgHis: 1.833 ± 0.432
1.833ArgIle: 1.833 ± 0.516
2.508ArgLys: 2.508 ± 0.615
5.595ArgLeu: 5.595 ± 0.676
0.868ArgMet: 0.868 ± 0.327
3.183ArgAsn: 3.183 ± 0.648
4.341ArgPro: 4.341 ± 0.9
3.666ArgGln: 3.666 ± 0.534
8.875ArgArg: 8.875 ± 1.972
5.113ArgSer: 5.113 ± 0.697
3.569ArgThr: 3.569 ± 0.465
4.92ArgVal: 4.92 ± 0.787
1.447ArgTrp: 1.447 ± 0.328
1.544ArgTyr: 1.544 ± 0.411
0.0ArgXaa: 0.0 ± 0.0
Ser
5.692SerAla: 5.692 ± 0.858
1.544SerCys: 1.544 ± 0.419
3.28SerAsp: 3.28 ± 0.54
3.473SerGlu: 3.473 ± 0.855
3.183SerPhe: 3.183 ± 0.396
5.209SerGly: 5.209 ± 0.94
1.833SerHis: 1.833 ± 0.314
2.219SerIle: 2.219 ± 0.473
2.605SerLys: 2.605 ± 0.443
8.489SerLeu: 8.489 ± 1.093
1.254SerMet: 1.254 ± 0.322
3.28SerAsn: 3.28 ± 0.877
4.727SerPro: 4.727 ± 1.04
3.087SerGln: 3.087 ± 0.516
5.113SerArg: 5.113 ± 0.593
6.078SerSer: 6.078 ± 0.874
3.666SerThr: 3.666 ± 0.671
3.955SerVal: 3.955 ± 0.61
0.675SerTrp: 0.675 ± 0.214
3.28SerTyr: 3.28 ± 0.553
0.0SerXaa: 0.0 ± 0.0
Thr
5.306ThrAla: 5.306 ± 0.934
1.544ThrCys: 1.544 ± 0.448
2.701ThrAsp: 2.701 ± 0.523
2.605ThrGlu: 2.605 ± 0.456
3.28ThrPhe: 3.28 ± 0.476
3.666ThrGly: 3.666 ± 0.765
1.833ThrHis: 1.833 ± 0.455
2.798ThrIle: 2.798 ± 0.303
1.061ThrLys: 1.061 ± 0.248
7.042ThrLeu: 7.042 ± 1.091
0.965ThrMet: 0.965 ± 0.335
2.219ThrAsn: 2.219 ± 0.378
3.859ThrPro: 3.859 ± 0.709
3.183ThrGln: 3.183 ± 0.431
2.701ThrArg: 2.701 ± 0.356
3.087ThrSer: 3.087 ± 0.841
3.087ThrThr: 3.087 ± 0.56
4.245ThrVal: 4.245 ± 0.71
0.965ThrTrp: 0.965 ± 0.302
2.508ThrTyr: 2.508 ± 0.723
0.0ThrXaa: 0.0 ± 0.0
Val
4.92ValAla: 4.92 ± 0.903
0.868ValCys: 0.868 ± 0.273
3.087ValAsp: 3.087 ± 0.735
3.955ValGlu: 3.955 ± 0.44
3.087ValPhe: 3.087 ± 0.514
3.666ValGly: 3.666 ± 0.718
2.026ValHis: 2.026 ± 0.386
2.508ValIle: 2.508 ± 0.511
3.762ValLys: 3.762 ± 0.69
5.306ValLeu: 5.306 ± 0.804
0.965ValMet: 0.965 ± 0.258
2.991ValAsn: 2.991 ± 0.531
4.052ValPro: 4.052 ± 0.719
2.991ValGln: 2.991 ± 0.553
4.052ValArg: 4.052 ± 0.737
3.473ValSer: 3.473 ± 0.569
4.438ValThr: 4.438 ± 0.748
4.631ValVal: 4.631 ± 0.62
0.579ValTrp: 0.579 ± 0.212
3.376ValTyr: 3.376 ± 0.607
0.0ValXaa: 0.0 ± 0.0
Trp
0.482TrpAla: 0.482 ± 0.202
0.0TrpCys: 0.0 ± 0.0
0.579TrpAsp: 0.579 ± 0.235
0.579TrpGlu: 0.579 ± 0.263
0.579TrpPhe: 0.579 ± 0.273
0.868TrpGly: 0.868 ± 0.272
0.289TrpHis: 0.289 ± 0.147
0.482TrpIle: 0.482 ± 0.197
0.579TrpLys: 0.579 ± 0.203
1.64TrpLeu: 1.64 ± 0.364
0.482TrpMet: 0.482 ± 0.2
0.386TrpAsn: 0.386 ± 0.232
0.579TrpPro: 0.579 ± 0.213
0.965TrpGln: 0.965 ± 0.294
0.868TrpArg: 0.868 ± 0.218
1.447TrpSer: 1.447 ± 0.392
0.965TrpThr: 0.965 ± 0.237
0.386TrpVal: 0.386 ± 0.172
0.193TrpTrp: 0.193 ± 0.115
0.193TrpTyr: 0.193 ± 0.122
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.219TyrAla: 2.219 ± 0.492
0.772TyrCys: 0.772 ± 0.27
2.315TyrAsp: 2.315 ± 0.477
1.254TyrGlu: 1.254 ± 0.383
2.219TyrPhe: 2.219 ± 0.645
0.868TyrGly: 0.868 ± 0.245
0.482TyrHis: 0.482 ± 0.168
0.868TyrIle: 0.868 ± 0.26
1.64TyrLys: 1.64 ± 0.512
3.569TyrLeu: 3.569 ± 0.626
1.158TyrMet: 1.158 ± 0.279
1.736TyrAsn: 1.736 ± 0.503
1.447TyrPro: 1.447 ± 0.329
1.254TyrGln: 1.254 ± 0.333
2.412TyrArg: 2.412 ± 0.512
2.219TyrSer: 2.219 ± 0.516
1.833TyrThr: 1.833 ± 0.329
3.087TyrVal: 3.087 ± 0.59
0.579TyrTrp: 0.579 ± 0.167
1.061TyrTyr: 1.061 ± 0.285
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 28 proteins (10367 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski