Cyprinid herpesvirus 1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Alloherpesviridae; Cyprinivirus

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 137 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K7PC75|K7PC75_9VIRU Protein ORF70 OS=Cyprinid herpesvirus 1 OX=317858 GN=CyHV1_ORF70 PE=4 SV=1
MM1 pKa = 7.51ALLWSLVFLLATCAISVTCQSVTWTRR27 pKa = 11.84SSPCSPMGTTLVITGAYY44 pKa = 7.87TMPTGQYY51 pKa = 9.84AIAGAILSPNMDD63 pKa = 3.33IKK65 pKa = 10.16TVATVTTRR73 pKa = 11.84ATVNLTPGNKK83 pKa = 8.56GTVTFTLSGVRR94 pKa = 11.84MSDD97 pKa = 2.76ATFTGFALKK106 pKa = 10.81VLTTTGASTTMSTLAPPITVATNPSIRR133 pKa = 11.84VLRR136 pKa = 11.84YY137 pKa = 9.26NDD139 pKa = 3.32YY140 pKa = 10.82SLGGGTVLRR149 pKa = 11.84CVQSCNSTINNHH161 pKa = 3.84VWYY164 pKa = 10.64KK165 pKa = 10.62NGLKK169 pKa = 9.9IGSAIGTDD177 pKa = 3.38MTAVDD182 pKa = 3.98SGLYY186 pKa = 8.53TCEE189 pKa = 4.06PDD191 pKa = 3.75GSINTRR197 pKa = 11.84SNSIWVGTPTYY208 pKa = 10.79DD209 pKa = 5.0CPFDD213 pKa = 3.71LAKK216 pKa = 9.68WCSSGFITRR225 pKa = 11.84RR226 pKa = 11.84HH227 pKa = 5.28EE228 pKa = 4.59NNVKK232 pKa = 10.32AYY234 pKa = 10.43NSDD237 pKa = 3.16HH238 pKa = 6.09TRR240 pKa = 11.84TVGNTFVCGSSTDD253 pKa = 3.56GTSPAISTRR262 pKa = 11.84GMCPNRR268 pKa = 11.84TTCTSEE274 pKa = 3.79KK275 pKa = 8.61TTMCANNNPVINVACGMVISYY296 pKa = 7.56TCPTISPFEE305 pKa = 4.39SIGIVSSSGSEE316 pKa = 3.94FALSPVAGEE325 pKa = 4.26RR326 pKa = 11.84RR327 pKa = 11.84LEE329 pKa = 4.04TSTKK333 pKa = 9.87GNVYY337 pKa = 10.23KK338 pKa = 10.39IWCGSDD344 pKa = 3.41YY345 pKa = 11.25EE346 pKa = 4.81LVAPCGTSSSYY357 pKa = 10.65SAHH360 pKa = 7.14PSTFIPIGAGATWTTTGVTQSEE382 pKa = 4.49TMIIAVGTVFNITCPDD398 pKa = 3.34NTVVAWYY405 pKa = 10.08KK406 pKa = 11.11DD407 pKa = 3.18KK408 pKa = 10.64TLFSSLIGSRR418 pKa = 11.84STKK421 pKa = 10.94NMVKK425 pKa = 10.43NLTADD430 pKa = 3.6DD431 pKa = 4.01YY432 pKa = 12.18GMWEE436 pKa = 4.48CVSFTTTGSTLGARR450 pKa = 11.84TRR452 pKa = 11.84LISISAPTTTVTTPLTTPSTTAATTAAATNATTAATTAAATNATTAATTAAATNATTAATTAATTAAATNATTAATTEE530 pKa = 4.0AATNATTAATTAATTEE546 pKa = 4.0AATNATTAATTASATNATTAATTEE570 pKa = 4.0AATNATTAATTEE582 pKa = 4.0AATNATTAATTEE594 pKa = 4.0AATNATTAATTAATTEE610 pKa = 4.0AATNATTAATTAATTEE626 pKa = 4.0AATNATTAATTAATTEE642 pKa = 4.0AATNATTAATTAATTEE658 pKa = 4.0AATNATTAATTAATTEE674 pKa = 4.0AATNATTAATTAATTEE690 pKa = 4.0AATNATTEE698 pKa = 4.01AATNATTEE706 pKa = 4.01AATNATMSPTTPDD719 pKa = 3.06ASNATTDD726 pKa = 3.32ASTPDD731 pKa = 3.28ASNATTAATTEE742 pKa = 4.26DD743 pKa = 3.42ATNATTEE750 pKa = 3.97AATNATMSPATPDD763 pKa = 3.2ASNATTDD770 pKa = 3.32ASTPDD775 pKa = 3.28ASNATTAATTPDD787 pKa = 3.54ASNATTDD794 pKa = 3.3AATNATMSPTTPDD807 pKa = 3.06ASNATTDD814 pKa = 3.12ASTPDD819 pKa = 3.48TSNATTDD826 pKa = 2.83ATTAGNTPATTPGTPEE842 pKa = 3.96TTTGRR847 pKa = 11.84PLTTPSPTTQSTPINPTGLSTLTMAAIIGGAAGGAALIAAIVAVCVIHH895 pKa = 7.04NGII898 pKa = 4.04

Molecular weight: 89.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K7PC85|K7PC85_9VIRU Protein ORF85 OS=Cyprinid herpesvirus 1 OX=317858 GN=CyHV1_ORF85 PE=4 SV=1
MM1 pKa = 7.6EE2 pKa = 5.8LPRR5 pKa = 11.84VAIPAEE11 pKa = 3.94ARR13 pKa = 11.84EE14 pKa = 4.04LGITKK19 pKa = 8.84TLSEE23 pKa = 5.39LYY25 pKa = 9.43PSHH28 pKa = 7.01RR29 pKa = 11.84FYY31 pKa = 11.06RR32 pKa = 11.84GQRR35 pKa = 11.84RR36 pKa = 11.84IAIKK40 pKa = 10.82LEE42 pKa = 4.02VEE44 pKa = 4.05GDD46 pKa = 3.69EE47 pKa = 4.01QDD49 pKa = 3.78LVVRR53 pKa = 11.84LTKK56 pKa = 10.09SLRR59 pKa = 11.84GRR61 pKa = 11.84VWTKK65 pKa = 9.26PQLRR69 pKa = 11.84AQILSLLPGLSGQQGEE85 pKa = 4.78DD86 pKa = 3.0ACQAAAEE93 pKa = 4.24ALTRR97 pKa = 11.84SAPFTLKK104 pKa = 10.2SVRR107 pKa = 11.84SALISTRR114 pKa = 11.84FFARR118 pKa = 11.84MGSLVDD124 pKa = 3.54SRR126 pKa = 11.84VKK128 pKa = 10.77RR129 pKa = 11.84EE130 pKa = 3.75FEE132 pKa = 3.97CGKK135 pKa = 10.79GYY137 pKa = 10.65LVDD140 pKa = 3.81HH141 pKa = 6.75LKK143 pKa = 10.66AVYY146 pKa = 9.29GWRR149 pKa = 11.84PLASAVNVTSKK160 pKa = 10.86VPLGHH165 pKa = 5.75SCEE168 pKa = 4.35RR169 pKa = 11.84CHH171 pKa = 6.98SVCSRR176 pKa = 11.84QVPSHH181 pKa = 5.44KK182 pKa = 9.65TEE184 pKa = 4.17LDD186 pKa = 3.11AVAVDD191 pKa = 3.74EE192 pKa = 4.59RR193 pKa = 11.84GEE195 pKa = 4.1YY196 pKa = 10.82ALLEE200 pKa = 4.22IKK202 pKa = 9.31TRR204 pKa = 11.84SSSTVTAALLRR215 pKa = 11.84RR216 pKa = 11.84YY217 pKa = 8.5QVQTWIGEE225 pKa = 4.02MMFRR229 pKa = 11.84NTYY232 pKa = 9.92GMCTSKK238 pKa = 10.76AIHH241 pKa = 6.37SYY243 pKa = 10.37IVFVDD248 pKa = 4.0PCSYY252 pKa = 10.36TVDD255 pKa = 3.35RR256 pKa = 11.84VICVDD261 pKa = 3.53SKK263 pKa = 11.63LNRR266 pKa = 11.84PSPRR270 pKa = 11.84LFALFPSLLNLCQAKK285 pKa = 10.38LSAPRR290 pKa = 11.84VLLRR294 pKa = 11.84PPAGRR299 pKa = 11.84PSRR302 pKa = 11.84PCASGAAVKK311 pKa = 10.41RR312 pKa = 11.84KK313 pKa = 9.69RR314 pKa = 11.84PSGAAAAEE322 pKa = 4.54KK323 pKa = 10.19KK324 pKa = 10.33RR325 pKa = 11.84KK326 pKa = 9.07AA327 pKa = 3.43

Molecular weight: 36.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

137

0

137

65611

64

3611

478.9

53.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.241 ± 0.257

2.55 ± 0.116

5.394 ± 0.11

6.243 ± 0.211

3.51 ± 0.126

5.587 ± 0.118

2.401 ± 0.092

3.824 ± 0.108

4.928 ± 0.173

9.128 ± 0.186

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.716 ± 0.087

3.64 ± 0.153

5.883 ± 0.212

3.597 ± 0.113

5.991 ± 0.195

8.092 ± 0.172

6.776 ± 0.323

6.909 ± 0.132

1.468 ± 0.075

3.123 ± 0.094
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski