Cinara cedri

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea;

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 22140 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5E4M159|A0A5E4M159_9HEMI Isoform of A0A5E4M372 Uncharacterized protein OS=Cinara cedri OX=506608 GN=CINCED_3A021463 PE=4 SV=1
MM1 pKa = 7.93RR2 pKa = 11.84LFLYY6 pKa = 9.78TLLVSTLAISKK17 pKa = 7.37TVRR20 pKa = 11.84TDD22 pKa = 2.91NPQPSDD28 pKa = 3.43QTNLEE33 pKa = 4.19LSVSNDD39 pKa = 2.97QSNSYY44 pKa = 10.41QNQNSLKK51 pKa = 10.65ADD53 pKa = 3.37VTNDD57 pKa = 3.22GKK59 pKa = 10.26HH60 pKa = 5.97ASLDD64 pKa = 3.55ASSQTVQNSQSKK76 pKa = 10.82NEE78 pKa = 3.72LHH80 pKa = 7.09LNIEE84 pKa = 4.21QSDD87 pKa = 4.0TDD89 pKa = 3.91SDD91 pKa = 4.63PNDD94 pKa = 3.52STISNSAMTNEE105 pKa = 5.09NINTLQQQSYY115 pKa = 9.19NFKK118 pKa = 10.38EE119 pKa = 4.49SNSLLLNMQNNNIDD133 pKa = 3.53NDD135 pKa = 4.08NNNSPDD141 pKa = 3.42SGTDD145 pKa = 3.32DD146 pKa = 5.18LEE148 pKa = 5.02SNNPTGQNFGLISPQPDD165 pKa = 3.45GASPQILGSGIQTNSPTQGQNIMSLSGTDD194 pKa = 3.34PNSINNADD202 pKa = 4.04AYY204 pKa = 10.81GPTQPRR210 pKa = 11.84DD211 pKa = 3.32SSSPQGSPINYY222 pKa = 9.13NDD224 pKa = 4.54DD225 pKa = 4.58NIPTAGGSSNGNTPPSSGGTTSPDD249 pKa = 2.9SSQIGSGSLPISTSPGGQNGLNPSLFDD276 pKa = 4.4PNSPNDD282 pKa = 3.59AGTFGPSQFPDD293 pKa = 3.13SSSLQGSPNNNNNDD307 pKa = 4.09NIPPAGGISNGNTPPSSGGPASPDD331 pKa = 3.16SPQIGSGSLPISTSPGGQNGLNPSLFDD358 pKa = 4.4PNSPNDD364 pKa = 3.59AGTFGPSQFPDD375 pKa = 3.13SSSLQGSPNNNNNDD389 pKa = 4.09NIPPAGGSSNGNTPPSSGGPASPSYY414 pKa = 9.33PQFGIGLVPLSYY426 pKa = 10.61LPSGQNGVNPSLFDD440 pKa = 4.33PNSINNAGAFGPSQPPDD457 pKa = 3.22SSSPQGSPNNNNNDD471 pKa = 4.09NIPPAGGSSNGNTPPSSGGPASPDD495 pKa = 3.16SPQIGSGSIPISTSPGGQNGLNPSLFDD522 pKa = 4.4PNSPNDD528 pKa = 3.75AGSNDD533 pKa = 3.68AGSFGPSQFPDD544 pKa = 3.13SSSLQGSPNNNNNDD558 pKa = 4.09NIPPAGGLSNGNSPPSSEE576 pKa = 4.09GSSTVTNLYY585 pKa = 8.82TKK587 pKa = 10.52SSEE590 pKa = 4.18LSNSEE595 pKa = 4.02YY596 pKa = 10.8FNGGVSHH603 pKa = 6.68SEE605 pKa = 3.6SSQFEE610 pKa = 3.93EE611 pKa = 4.94SISITSDD618 pKa = 2.94STEE621 pKa = 4.23MEE623 pKa = 4.05TQQYY627 pKa = 9.6VLNSYY632 pKa = 10.96SSGKK636 pKa = 9.69FICDD640 pKa = 3.34GYY642 pKa = 11.28GKK644 pKa = 10.42IIGVVFNHH652 pKa = 6.4SADD655 pKa = 3.56SGQGLDD661 pKa = 5.1TIDD664 pKa = 5.27LDD666 pKa = 4.22TNSVIWEE673 pKa = 4.75DD674 pKa = 3.53INMLGLDD681 pKa = 3.78IYY683 pKa = 10.97QFSGNAGNYY692 pKa = 10.02VGDD695 pKa = 4.21KK696 pKa = 10.74ADD698 pKa = 3.44NAYY701 pKa = 9.36TSSKK705 pKa = 10.91NSLGDD710 pKa = 3.25AANYY714 pKa = 10.39VGDD717 pKa = 4.29KK718 pKa = 10.94ADD720 pKa = 3.58NAYY723 pKa = 7.7TASKK727 pKa = 10.88NSLGDD732 pKa = 3.26AANYY736 pKa = 10.39VGDD739 pKa = 4.29KK740 pKa = 10.83ADD742 pKa = 3.44NAYY745 pKa = 9.36TSSKK749 pKa = 10.91NSLGDD754 pKa = 3.49AANHH758 pKa = 6.35VGDD761 pKa = 4.44IADD764 pKa = 3.64NAYY767 pKa = 9.31TSSKK771 pKa = 10.91NSLGDD776 pKa = 3.25AANYY780 pKa = 10.39VGDD783 pKa = 3.83KK784 pKa = 10.93AGAVNDD790 pKa = 4.0ASKK793 pKa = 10.74EE794 pKa = 4.04AGNSIHH800 pKa = 7.01SATNDD805 pKa = 3.62YY806 pKa = 11.37GHH808 pKa = 7.5DD809 pKa = 4.03LYY811 pKa = 11.44DD812 pKa = 3.96AGHH815 pKa = 6.21NFKK818 pKa = 10.84EE819 pKa = 4.25NAFGSSDD826 pKa = 3.38GDD828 pKa = 3.59VTNNVV833 pKa = 3.18

Molecular weight: 85.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5E4NGA4|A0A5E4NGA4_9HEMI 39S ribosomal protein L28 mitochondrial OS=Cinara cedri OX=506608 GN=CINCED_3A006303 PE=3 SV=1
MM1 pKa = 7.65GGQKK5 pKa = 9.56KK6 pKa = 9.38AAAEE10 pKa = 3.99TLSLGGGGPRR20 pKa = 11.84TPGVYY25 pKa = 9.15TRR27 pKa = 11.84AAFFNSAPGQTHH39 pKa = 5.34CRR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84TTRR49 pKa = 11.84CRR51 pKa = 11.84FVAPRR56 pKa = 11.84TTPPPVVYY64 pKa = 9.15PAFPLRR70 pKa = 11.84SIRR73 pKa = 11.84SPPPPPPPPKK83 pKa = 10.35SPPEE87 pKa = 4.17HH88 pKa = 6.18VCSTTKK94 pKa = 10.13GHH96 pKa = 6.93CASQPLAPGKK106 pKa = 9.86WNDD109 pKa = 2.71IFFGIFRR116 pKa = 11.84DD117 pKa = 3.88STHH120 pKa = 7.43DD121 pKa = 3.38EE122 pKa = 4.51LYY124 pKa = 10.25TLGFRR129 pKa = 11.84EE130 pKa = 4.1RR131 pKa = 11.84PLDD134 pKa = 3.73EE135 pKa = 5.2KK136 pKa = 11.11SRR138 pKa = 11.84CDD140 pKa = 3.14RR141 pKa = 11.84TVPSGDD147 pKa = 3.34VFSS150 pKa = 4.53

Molecular weight: 16.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

16923

5217

22140

10829743

38

16606

489.1

55.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.286 ± 0.018

2.051 ± 0.034

5.558 ± 0.013

6.231 ± 0.019

3.914 ± 0.015

5.058 ± 0.023

2.426 ± 0.008

6.562 ± 0.019

7.139 ± 0.023

8.952 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.379 ± 0.008

6.232 ± 0.018

4.742 ± 0.026

4.167 ± 0.021

4.637 ± 0.017

8.209 ± 0.021

5.957 ± 0.013

6.028 ± 0.014

1.055 ± 0.007

3.398 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski