Sparganum proliferum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Cestoda; Eucestoda; Diphyllobothriidea; Diphyllobothriidae; Sparganum

Average proteome isoelectric point is 7.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 22389 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A654I8C3|A0A654I8C3_9CEST Reverse transcriptase domain-containing protein OS=Sparganum proliferum OX=64606 GN=SPRV2_LOCUS22653 PE=4 SV=1
PP1 pKa = 7.02SAHH4 pKa = 6.76YY5 pKa = 10.79DD6 pKa = 4.46DD7 pKa = 5.71IDD9 pKa = 4.13VDD11 pKa = 4.39DD12 pKa = 5.48DD13 pKa = 3.85VAAAAVDD20 pKa = 4.19DD21 pKa = 5.3ADD23 pKa = 5.91GDD25 pKa = 5.06DD26 pKa = 6.18DD27 pKa = 7.05DD28 pKa = 7.73DD29 pKa = 7.72DD30 pKa = 7.61DD31 pKa = 7.68DD32 pKa = 7.65DD33 pKa = 7.65DD34 pKa = 7.65DD35 pKa = 7.65DD36 pKa = 7.65DD37 pKa = 7.65DD38 pKa = 7.65DD39 pKa = 7.61DD40 pKa = 7.44DD41 pKa = 7.09DD42 pKa = 6.58DD43 pKa = 6.51GGGGGCSVSGPSHH56 pKa = 6.99HH57 pKa = 7.99DD58 pKa = 2.89IRR60 pKa = 11.84PQTRR64 pKa = 11.84DD65 pKa = 2.68KK66 pKa = 10.78RR67 pKa = 11.84TIKK70 pKa = 10.74VMTPVHH76 pKa = 5.81TFFVLIGHH84 pKa = 7.1PSAYY88 pKa = 10.08DD89 pKa = 3.37SPPCHH94 pKa = 6.94ISDD97 pKa = 4.44LVYY100 pKa = 10.58KK101 pKa = 10.05PPHH104 pKa = 6.28LCCLSYY110 pKa = 10.65SVHH113 pKa = 6.75VLFPINLLFCIHH125 pKa = 6.81NIGNATT131 pKa = 3.41

Molecular weight: 14.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A654GFY6|A0A654GFY6_9CEST Uncharacterized protein OS=Sparganum proliferum OX=64606 GN=SPRV2_LOCUS20 PE=4 SV=1
RR1 pKa = 7.24RR2 pKa = 11.84RR3 pKa = 11.84WRR5 pKa = 11.84GWWRR9 pKa = 11.84NRR11 pKa = 11.84RR12 pKa = 11.84WRR14 pKa = 11.84RR15 pKa = 11.84SRR17 pKa = 11.84RR18 pKa = 11.84WRR20 pKa = 11.84RR21 pKa = 11.84NRR23 pKa = 11.84RR24 pKa = 11.84WRR26 pKa = 11.84SRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84IGRR33 pKa = 11.84WARR36 pKa = 11.84WWTRR40 pKa = 11.84RR41 pKa = 11.84WTRR44 pKa = 11.84RR45 pKa = 11.84WTRR48 pKa = 11.84RR49 pKa = 11.84WTCC52 pKa = 2.99

Molecular weight: 7.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

22389

0

22389

9039214

13

10665

403.7

44.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.021 ± 0.016

2.05 ± 0.01

5.402 ± 0.015

5.697 ± 0.02

3.782 ± 0.014

5.656 ± 0.018

2.7 ± 0.007

4.36 ± 0.013

4.31 ± 0.015

9.805 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.932 ± 0.008

3.683 ± 0.009

6.388 ± 0.022

4.184 ± 0.012

7.001 ± 0.017

8.979 ± 0.027

6.533 ± 0.017

6.131 ± 0.014

1.07 ± 0.005

2.307 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski