Jiulongibacter sediminis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Jiulongibacter

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3642 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0P7BVU8|A0A0P7BVU8_9BACT Uncharacterized protein OS=Jiulongibacter sediminis OX=1605367 GN=AFM12_10375 PE=4 SV=1
MM1 pKa = 7.37KK2 pKa = 10.73VNFRR6 pKa = 11.84LLFLFAWLISLNSKK20 pKa = 10.02AQFNGSNGDD29 pKa = 3.73GFDD32 pKa = 3.08KK33 pKa = 9.05TTFSGYY39 pKa = 10.55LDD41 pKa = 3.64GVEE44 pKa = 4.18PLLFGGGNGDD54 pKa = 4.12GFDD57 pKa = 3.5LKK59 pKa = 11.09LFNGYY64 pKa = 10.4LDD66 pKa = 3.45GTEE69 pKa = 3.89PVLFGGGNGDD79 pKa = 3.63GFDD82 pKa = 3.68RR83 pKa = 11.84LQFMGFLDD91 pKa = 4.79GYY93 pKa = 10.47EE94 pKa = 3.96LALYY98 pKa = 9.41TGGNGDD104 pKa = 5.0GFDD107 pKa = 3.23QSLFSGYY114 pKa = 10.92LNGTEE119 pKa = 3.82PVLFGGGNGDD129 pKa = 3.75GFDD132 pKa = 5.13LILFTGYY139 pKa = 10.95LDD141 pKa = 3.69GLEE144 pKa = 4.08PVLFGGGNGDD154 pKa = 5.63GFDD157 pKa = 3.31QSNFLGYY164 pKa = 10.58LDD166 pKa = 4.21GVEE169 pKa = 4.54PNLFSGGNGDD179 pKa = 4.11GFDD182 pKa = 3.68FGARR186 pKa = 11.84SAYY189 pKa = 10.25LSPNGPCVQGTLLTINDD206 pKa = 3.62NPINSGIYY214 pKa = 9.19EE215 pKa = 4.13NQGTISSEE223 pKa = 3.86GKK225 pKa = 9.86INSGSNVEE233 pKa = 4.18FTSNRR238 pKa = 11.84EE239 pKa = 3.86IILQPGFSSEE249 pKa = 4.07NNTVFHH255 pKa = 6.99AFIGPCNTVPVNLL268 pKa = 4.35

Molecular weight: 28.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0P7C447|A0A0P7C447_9BACT Serine hydroxymethyltransferase OS=Jiulongibacter sediminis OX=1605367 GN=glyA PE=3 SV=1
MM1 pKa = 7.62NYY3 pKa = 10.45SSLLTIHH10 pKa = 6.32SWFRR14 pKa = 11.84WAVLISLIITIGRR27 pKa = 11.84AWFGRR32 pKa = 11.84RR33 pKa = 11.84NKK35 pKa = 9.5LTFTTFDD42 pKa = 2.91NKK44 pKa = 9.75LRR46 pKa = 11.84HH47 pKa = 4.86MTATICHH54 pKa = 5.77IQLMLGFWLYY64 pKa = 10.6FISPIVTYY72 pKa = 9.74FLNNFGEE79 pKa = 4.46AVHH82 pKa = 6.26LRR84 pKa = 11.84EE85 pKa = 3.69IRR87 pKa = 11.84FFGMEE92 pKa = 5.14HH93 pKa = 5.15ITVMIFAILVITIGSMKK110 pKa = 10.38AKK112 pKa = 9.9RR113 pKa = 11.84KK114 pKa = 9.16HH115 pKa = 5.98ADD117 pKa = 3.39RR118 pKa = 11.84EE119 pKa = 4.34KK120 pKa = 11.03FNTIYY125 pKa = 10.3VWYY128 pKa = 10.3SIGLLLILSSIPWSFLPLTSRR149 pKa = 11.84PLLRR153 pKa = 11.84VFF155 pKa = 4.66

Molecular weight: 18.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3642

0

3642

1288792

38

3806

353.9

39.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.821 ± 0.036

0.789 ± 0.014

5.546 ± 0.034

6.975 ± 0.046

5.161 ± 0.033

7.238 ± 0.042

1.793 ± 0.018

6.904 ± 0.036

6.729 ± 0.043

9.547 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.354 ± 0.022

5.395 ± 0.033

3.861 ± 0.023

3.569 ± 0.022

3.848 ± 0.028

6.744 ± 0.039

5.416 ± 0.053

6.261 ± 0.029

1.215 ± 0.015

3.834 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski