Acidianus hospitalis (strain W1)

Taxonomy: cellular organisms; Archaea; TACK group; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Acidianus; Acidianus hospitalis

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2329 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F4B676|F4B676_ACIHW 4-hydroxybenzoate polyprenyltransferase OS=Acidianus hospitalis (strain W1) OX=933801 GN=Ahos_0476 PE=4 SV=1
MM1 pKa = 7.2AQAEE5 pKa = 4.54FVFEE9 pKa = 4.17EE10 pKa = 4.46TVRR13 pKa = 11.84IYY15 pKa = 10.47DD16 pKa = 3.56TDD18 pKa = 3.71TQGIAHH24 pKa = 6.3YY25 pKa = 10.56ASYY28 pKa = 11.42

Molecular weight: 3.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F4B464|F4B464_ACIHW Translation initiation factor 6 OS=Acidianus hospitalis (strain W1) OX=933801 GN=eif6 PE=3 SV=1
MM1 pKa = 7.24STTKK5 pKa = 10.4PLAKK9 pKa = 10.1KK10 pKa = 10.25LRR12 pKa = 11.84LAKK15 pKa = 10.29ALKK18 pKa = 10.3SNSAIPAWVILKK30 pKa = 9.3TNGKK34 pKa = 9.17VRR36 pKa = 11.84INPLRR41 pKa = 11.84RR42 pKa = 11.84NWRR45 pKa = 11.84RR46 pKa = 11.84NSLKK50 pKa = 10.65VV51 pKa = 3.18

Molecular weight: 5.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2329

0

2329

620352

28

1321

266.4

30.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.79 ± 0.049

0.791 ± 0.02

4.806 ± 0.043

7.306 ± 0.06

4.501 ± 0.048

6.499 ± 0.049

1.277 ± 0.016

9.778 ± 0.052

8.289 ± 0.061

9.994 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.243 ± 0.023

4.708 ± 0.04

3.881 ± 0.039

2.031 ± 0.025

4.032 ± 0.041

6.777 ± 0.053

4.536 ± 0.043

7.091 ± 0.043

0.963 ± 0.02

4.707 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski