Succinatimonas hippei (strain DSM 22608 / JCM 16073 / KCTC 15190 / YIT 12066)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Succinivibrionaceae; Succinatimonas; Succinatimonas hippei

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2169 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E8LLN0|E8LLN0_SUCHY ATP synthase F(1) sector subunit delta OS=Succinatimonas hippei (strain DSM 22608 / JCM 16073 / KCTC 15190 / YIT 12066) OX=762983 GN=atpH PE=4 SV=1
MM1 pKa = 7.66HH2 pKa = 7.5EE3 pKa = 4.36FLGDD7 pKa = 3.45QDD9 pKa = 4.28ISAFDD14 pKa = 3.42NTGTLDD20 pKa = 3.39TTYY23 pKa = 11.03EE24 pKa = 4.82NDD26 pKa = 3.61DD27 pKa = 2.63TWYY30 pKa = 10.47NVGVGLSVMSSQNTYY45 pKa = 10.39FFIEE49 pKa = 4.26KK50 pKa = 9.02EE51 pKa = 4.05QSFGADD57 pKa = 3.04NEE59 pKa = 4.31DD60 pKa = 4.33TYY62 pKa = 11.57TVAGGFRR69 pKa = 11.84HH70 pKa = 6.14NFF72 pKa = 3.22

Molecular weight: 8.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E8LHY7|E8LHY7_SUCHY TRAP transporter DctM subunit OS=Succinatimonas hippei (strain DSM 22608 / JCM 16073 / KCTC 15190 / YIT 12066) OX=762983 GN=HMPREF9444_00300 PE=4 SV=1
MM1 pKa = 7.48LGIGRR6 pKa = 11.84TLLLQLFVVISKK18 pKa = 10.86SSLFKK23 pKa = 10.73KK24 pKa = 9.93LRR26 pKa = 11.84PRR28 pKa = 11.84FGQNRR33 pKa = 11.84QNIARR38 pKa = 11.84RR39 pKa = 11.84QKK41 pKa = 9.92II42 pKa = 3.35

Molecular weight: 4.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2169

0

2169

675290

29

1823

311.3

34.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.297 ± 0.061

1.498 ± 0.024

5.741 ± 0.045

5.969 ± 0.05

4.784 ± 0.041

6.616 ± 0.055

1.834 ± 0.026

7.514 ± 0.045

6.983 ± 0.059

10.226 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.497 ± 0.029

4.821 ± 0.046

3.677 ± 0.031

3.025 ± 0.027

4.261 ± 0.036

6.516 ± 0.045

4.876 ± 0.038

6.694 ± 0.052

0.781 ± 0.018

3.391 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski