Schizopora paradoxa

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Hymenochaetales; Schizoporaceae; Schizopora

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 17051 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0H2SJU8|A0A0H2SJU8_9AGAM Peptidase_M48 domain-containing protein OS=Schizopora paradoxa OX=27342 GN=SCHPADRAFT_937090 PE=4 SV=1
MM1 pKa = 7.03YY2 pKa = 10.56AFGGFVYY9 pKa = 10.45SLSSCPSAEE18 pKa = 3.85TMASDD23 pKa = 4.29FSTMKK28 pKa = 10.5SVGSRR33 pKa = 11.84IVVTFDD39 pKa = 2.98PCEE42 pKa = 4.57DD43 pKa = 3.91GSEE46 pKa = 3.89DD47 pKa = 3.7TYY49 pKa = 11.98DD50 pKa = 3.58NVFAAAGAAGIYY62 pKa = 8.26VIPIAWTLVDD72 pKa = 4.08SGTFTSEE79 pKa = 3.84SVPRR83 pKa = 11.84LEE85 pKa = 4.61AVTDD89 pKa = 3.93AVIKK93 pKa = 10.82NPSNVIAVAYY103 pKa = 10.08GDD105 pKa = 4.58EE106 pKa = 4.49PLLDD110 pKa = 5.2DD111 pKa = 5.48DD112 pKa = 5.94AGSASNLATYY122 pKa = 7.44VTQMKK127 pKa = 10.58SEE129 pKa = 4.07FVNAGLDD136 pKa = 3.52MPVSISEE143 pKa = 4.34MAGGWQNSANGDD155 pKa = 3.4ISSMVAAIDD164 pKa = 3.6FFMVNDD170 pKa = 3.78MPYY173 pKa = 10.02FFPDD177 pKa = 2.95ATTGGSSGSWNDD189 pKa = 3.3FVSDD193 pKa = 3.99LEE195 pKa = 4.54YY196 pKa = 10.49IASIANGKK204 pKa = 9.42HH205 pKa = 5.47IMVTQTGWPSNEE217 pKa = 4.82DD218 pKa = 3.03EE219 pKa = 4.72FAPNSNSIDD228 pKa = 3.28ASVSSEE234 pKa = 3.71AAFWQLLDD242 pKa = 3.77SHH244 pKa = 7.36CSDD247 pKa = 4.05FFKK250 pKa = 11.01PNDD253 pKa = 3.76IAWMWRR259 pKa = 11.84SWDD262 pKa = 3.53DD263 pKa = 4.98HH264 pKa = 5.12ITGWGVLDD272 pKa = 4.11SNGNPKK278 pKa = 9.09FTVQASTSCC287 pKa = 3.29

Molecular weight: 30.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0H2RAV5|A0A0H2RAV5_9AGAM Mannose-P-dolichol utilization defect 1 protein homolog OS=Schizopora paradoxa OX=27342 GN=SCHPADRAFT_1002241 PE=3 SV=1
MM1 pKa = 7.43KK2 pKa = 10.43RR3 pKa = 11.84LLLLVVSMQVGKK15 pKa = 10.47ARR17 pKa = 11.84PSSVIRR23 pKa = 11.84RR24 pKa = 11.84PTRR27 pKa = 11.84PANLLLAFTRR37 pKa = 11.84IHH39 pKa = 6.85PPLSSRR45 pKa = 11.84RR46 pKa = 11.84EE47 pKa = 3.68RR48 pKa = 11.84ARR50 pKa = 11.84QRR52 pKa = 11.84VWRR55 pKa = 11.84MKK57 pKa = 9.91RR58 pKa = 11.84LHH60 pKa = 6.6PFGSNVRR67 pKa = 11.84PLVRR71 pKa = 11.84PLVRR75 pKa = 11.84PLVLHH80 pKa = 6.64LSPSIALLPPPSAHH94 pKa = 6.4HH95 pKa = 6.44SSPIHH100 pKa = 6.05HH101 pKa = 7.1LFITTSSRR109 pKa = 11.84ARR111 pKa = 11.84PRR113 pKa = 11.84PPKK116 pKa = 10.0ASKK119 pKa = 9.44PAPSLMPRR127 pKa = 11.84LINGSS132 pKa = 3.44

Molecular weight: 14.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

17050

1

17051

7036197

49

4931

412.7

45.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.975 ± 0.018

1.421 ± 0.008

5.676 ± 0.014

6.082 ± 0.021

4.121 ± 0.011

6.231 ± 0.015

2.445 ± 0.009

4.99 ± 0.013

4.746 ± 0.018

9.383 ± 0.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.132 ± 0.007

3.679 ± 0.009

5.886 ± 0.021

3.501 ± 0.012

6.401 ± 0.017

9.246 ± 0.025

5.799 ± 0.013

6.341 ± 0.014

1.369 ± 0.007

2.578 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski