Rosa chinensis (China rose)

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 45026 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P6S819|A0A2P6S819_ROSCH Putative endothelin-converting enzyme 1 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0318081 PE=4 SV=1
MM1 pKa = 7.81ANGQPPVDD9 pKa = 3.54IKK11 pKa = 10.99KK12 pKa = 9.48QASSEE17 pKa = 3.82ICNICWEE24 pKa = 4.15EE25 pKa = 3.85LQEE28 pKa = 4.14VNHH31 pKa = 5.9VKK33 pKa = 10.38EE34 pKa = 4.15MPKK37 pKa = 9.63CKK39 pKa = 10.18HH40 pKa = 5.8MFHH43 pKa = 6.07VHH45 pKa = 7.41CINAWLAKK53 pKa = 9.77NACCPLCRR61 pKa = 11.84RR62 pKa = 11.84FAVVPDD68 pKa = 4.74LISILVQEE76 pKa = 4.9YY77 pKa = 10.81EE78 pKa = 5.09DD79 pKa = 4.93DD80 pKa = 4.24HH81 pKa = 9.11DD82 pKa = 6.09DD83 pKa = 4.08DD84 pKa = 5.23GPYY87 pKa = 10.89VSIHH91 pKa = 6.87DD92 pKa = 5.07LLMEE96 pKa = 5.88DD97 pKa = 5.51DD98 pKa = 6.02DD99 pKa = 4.42EE100 pKa = 5.5TDD102 pKa = 4.46DD103 pKa = 5.5IIPILIPDD111 pKa = 4.29HH112 pKa = 6.82EE113 pKa = 4.93NGVDD117 pKa = 4.22PIGLGNVDD125 pKa = 3.41NAEE128 pKa = 4.16DD129 pKa = 3.75VLVGLVEE136 pKa = 3.78EE137 pKa = 5.38HH138 pKa = 6.44IRR140 pKa = 11.84DD141 pKa = 4.01YY142 pKa = 11.33IPILVTYY149 pKa = 9.96HH150 pKa = 7.04HH151 pKa = 7.93DD152 pKa = 4.5DD153 pKa = 3.82GLDD156 pKa = 3.55PMSLGNDD163 pKa = 3.56DD164 pKa = 5.02DD165 pKa = 5.9FDD167 pKa = 3.85MGLDD171 pKa = 3.71QEE173 pKa = 4.09EE174 pKa = 4.14DD175 pKa = 3.61AYY177 pKa = 10.23IEE179 pKa = 4.3SLVFSSSDD187 pKa = 3.55DD188 pKa = 3.24DD189 pKa = 4.64WYY191 pKa = 11.26GQDD194 pKa = 4.1DD195 pKa = 4.57TEE197 pKa = 4.6TQNSQQ202 pKa = 2.69

Molecular weight: 22.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P6PQ00|A0A2P6PQ00_ROSCH Putative transcription factor MYB-HB-like family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0267581 PE=4 SV=1
MM1 pKa = 7.76ASLKK5 pKa = 10.47ASRR8 pKa = 11.84AAATKK13 pKa = 9.95SAPSSSRR20 pKa = 11.84TVPPPLAPARR30 pKa = 11.84SRR32 pKa = 11.84PAPPPPSATARR43 pKa = 11.84SRR45 pKa = 11.84PAPPPPSATARR56 pKa = 11.84SRR58 pKa = 11.84PATSGTASSRR68 pKa = 11.84HH69 pKa = 4.74VRR71 pKa = 11.84TSQASSNKK79 pKa = 9.19AANPTRR85 pKa = 11.84ASQRR89 pKa = 11.84IRR91 pKa = 11.84QNSGKK96 pKa = 10.69GGGKK100 pKa = 9.75

Molecular weight: 10.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

45026

0

45026

14462663

40

5463

321.2

35.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.407 ± 0.012

2.021 ± 0.006

5.149 ± 0.009

6.242 ± 0.014

4.418 ± 0.009

6.495 ± 0.011

2.422 ± 0.005

5.422 ± 0.009

6.029 ± 0.011

10.209 ± 0.017

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.495 ± 0.005

4.449 ± 0.009

4.759 ± 0.01

3.659 ± 0.009

5.144 ± 0.01

8.882 ± 0.015

4.931 ± 0.008

6.584 ± 0.01

1.389 ± 0.005

2.894 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski