Amino acid dipepetide frequency for Camel associated porprismacovirus 4

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.311AlaAla: 3.311 ± 1.971
1.656AlaCys: 1.656 ± 1.372
1.656AlaAsp: 1.656 ± 0.986
1.656AlaGlu: 1.656 ± 1.372
3.311AlaPhe: 3.311 ± 0.386
1.656AlaGly: 1.656 ± 0.986
3.311AlaHis: 3.311 ± 0.386
1.656AlaIle: 1.656 ± 0.986
3.311AlaLys: 3.311 ± 0.386
4.967AlaLeu: 4.967 ± 0.599
0.0AlaMet: 0.0 ± 0.0
1.656AlaAsn: 1.656 ± 0.986
1.656AlaPro: 1.656 ± 0.986
3.311AlaGln: 3.311 ± 1.971
1.656AlaArg: 1.656 ± 1.372
3.311AlaSer: 3.311 ± 2.744
4.967AlaThr: 4.967 ± 2.957
1.656AlaVal: 1.656 ± 1.372
0.0AlaTrp: 0.0 ± 0.0
1.656AlaTyr: 1.656 ± 0.986
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.656CysAsp: 1.656 ± 1.372
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.656CysSer: 1.656 ± 1.372
0.0CysThr: 0.0 ± 0.0
1.656CysVal: 1.656 ± 0.986
0.0CysTrp: 0.0 ± 0.0
1.656CysTyr: 1.656 ± 0.986
0.0CysXaa: 0.0 ± 0.0
Asp
0.0AspAla: 0.0 ± 0.0
0.0AspCys: 0.0 ± 0.0
0.0AspAsp: 0.0 ± 0.0
0.0AspGlu: 0.0 ± 0.0
3.311AspPhe: 3.311 ± 0.386
6.623AspGly: 6.623 ± 0.773
1.656AspHis: 1.656 ± 1.372
6.623AspIle: 6.623 ± 1.585
0.0AspLys: 0.0 ± 0.0
4.967AspLeu: 4.967 ± 2.957
4.967AspMet: 4.967 ± 2.957
0.0AspAsn: 0.0 ± 0.0
6.623AspPro: 6.623 ± 1.585
0.0AspGln: 0.0 ± 0.0
3.311AspArg: 3.311 ± 2.744
3.311AspSer: 3.311 ± 1.971
3.311AspThr: 3.311 ± 0.386
4.967AspVal: 4.967 ± 0.599
0.0AspTrp: 0.0 ± 0.0
1.656AspTyr: 1.656 ± 0.986
0.0AspXaa: 0.0 ± 0.0
Glu
3.311GluAla: 3.311 ± 0.386
1.656GluCys: 1.656 ± 0.986
1.656GluAsp: 1.656 ± 1.372
4.967GluGlu: 4.967 ± 4.116
1.656GluPhe: 1.656 ± 1.372
8.278GluGly: 8.278 ± 2.145
0.0GluHis: 0.0 ± 0.0
4.967GluIle: 4.967 ± 1.759
1.656GluLys: 1.656 ± 1.372
4.967GluLeu: 4.967 ± 1.759
0.0GluMet: 0.0 ± 0.0
3.311GluAsn: 3.311 ± 1.971
1.656GluPro: 1.656 ± 1.372
1.656GluGln: 1.656 ± 1.372
1.656GluArg: 1.656 ± 1.372
1.656GluSer: 1.656 ± 1.372
3.311GluThr: 3.311 ± 2.744
6.623GluVal: 6.623 ± 1.585
0.0GluTrp: 0.0 ± 0.0
1.656GluTyr: 1.656 ± 1.372
0.0GluXaa: 0.0 ± 0.0
Phe
1.656PheAla: 1.656 ± 0.986
0.0PheCys: 0.0 ± 0.0
4.967PheAsp: 4.967 ± 1.759
1.656PheGlu: 1.656 ± 1.372
3.311PhePhe: 3.311 ± 0.386
4.967PheGly: 4.967 ± 0.599
1.656PheHis: 1.656 ± 0.986
1.656PheIle: 1.656 ± 1.372
1.656PheLys: 1.656 ± 0.986
0.0PheLeu: 0.0 ± 0.0
0.0PheMet: 0.0 ± 0.0
1.656PheAsn: 1.656 ± 0.986
1.656PhePro: 1.656 ± 0.986
3.311PheGln: 3.311 ± 0.386
4.967PheArg: 4.967 ± 2.957
3.311PheSer: 3.311 ± 1.971
4.967PheThr: 4.967 ± 0.599
1.656PheVal: 1.656 ± 0.986
1.656PheTrp: 1.656 ± 1.372
3.311PheTyr: 3.311 ± 0.386
0.0PheXaa: 0.0 ± 0.0
Gly
3.311GlyAla: 3.311 ± 1.971
0.0GlyCys: 0.0 ± 0.0
1.656GlyAsp: 1.656 ± 1.372
8.278GlyGlu: 8.278 ± 2.145
4.967GlyPhe: 4.967 ± 2.957
6.623GlyGly: 6.623 ± 1.585
0.0GlyHis: 0.0 ± 0.0
3.311GlyIle: 3.311 ± 0.386
6.623GlyLys: 6.623 ± 5.488
4.967GlyLeu: 4.967 ± 1.759
0.0GlyMet: 0.0 ± 0.0
3.311GlyAsn: 3.311 ± 0.386
3.311GlyPro: 3.311 ± 1.971
0.0GlyGln: 0.0 ± 0.0
4.967GlyArg: 4.967 ± 1.759
11.589GlySer: 11.589 ± 2.531
11.589GlyThr: 11.589 ± 6.899
8.278GlyVal: 8.278 ± 2.57
0.0GlyTrp: 0.0 ± 0.0
1.656GlyTyr: 1.656 ± 1.372
0.0GlyXaa: 0.0 ± 0.0
His
1.656HisAla: 1.656 ± 0.986
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.0HisGlu: 0.0 ± 0.0
0.0HisPhe: 0.0 ± 0.0
6.623HisGly: 6.623 ± 0.773
0.0HisHis: 0.0 ± 0.0
1.656HisIle: 1.656 ± 1.372
0.0HisLys: 0.0 ± 0.0
1.656HisLeu: 1.656 ± 1.372
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
1.656HisArg: 1.656 ± 1.372
1.656HisSer: 1.656 ± 0.986
1.656HisThr: 1.656 ± 0.986
1.656HisVal: 1.656 ± 1.372
3.311HisTrp: 3.311 ± 2.744
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
1.656IleAla: 1.656 ± 1.372
1.656IleCys: 1.656 ± 1.372
6.623IleAsp: 6.623 ± 0.773
1.656IleGlu: 1.656 ± 1.372
1.656IlePhe: 1.656 ± 0.986
4.967IleGly: 4.967 ± 0.599
0.0IleHis: 0.0 ± 0.0
4.967IleIle: 4.967 ± 1.759
0.0IleLys: 0.0 ± 0.0
4.967IleLeu: 4.967 ± 4.116
3.311IleMet: 3.311 ± 1.971
1.656IleAsn: 1.656 ± 0.986
4.967IlePro: 4.967 ± 1.759
1.656IleGln: 1.656 ± 1.372
0.0IleArg: 0.0 ± 0.0
1.656IleSer: 1.656 ± 1.372
3.311IleThr: 3.311 ± 1.971
1.656IleVal: 1.656 ± 1.372
0.0IleTrp: 0.0 ± 0.0
4.967IleTyr: 4.967 ± 0.599
0.0IleXaa: 0.0 ± 0.0
Lys
1.656LysAla: 1.656 ± 1.372
0.0LysCys: 0.0 ± 0.0
3.311LysAsp: 3.311 ± 2.744
1.656LysGlu: 1.656 ± 1.372
1.656LysPhe: 1.656 ± 1.372
1.656LysGly: 1.656 ± 1.372
3.311LysHis: 3.311 ± 2.744
3.311LysIle: 3.311 ± 2.744
8.278LysLys: 8.278 ± 2.145
6.623LysLeu: 6.623 ± 3.131
0.0LysMet: 0.0 ± 0.0
1.656LysAsn: 1.656 ± 1.372
4.967LysPro: 4.967 ± 2.957
3.311LysGln: 3.311 ± 0.386
1.656LysArg: 1.656 ± 1.372
1.656LysSer: 1.656 ± 1.372
0.0LysThr: 0.0 ± 0.0
3.311LysVal: 3.311 ± 2.744
0.0LysTrp: 0.0 ± 0.0
4.967LysTyr: 4.967 ± 2.957
0.0LysXaa: 0.0 ± 0.0
Leu
1.656LeuAla: 1.656 ± 1.372
0.0LeuCys: 0.0 ± 0.0
6.623LeuAsp: 6.623 ± 1.585
6.623LeuGlu: 6.623 ± 3.131
3.311LeuPhe: 3.311 ± 0.386
0.0LeuGly: 0.0 ± 0.0
1.656LeuHis: 1.656 ± 1.372
0.0LeuIle: 0.0 ± 0.0
4.967LeuLys: 4.967 ± 4.116
3.311LeuLeu: 3.311 ± 0.386
0.0LeuMet: 0.0 ± 0.0
6.623LeuAsn: 6.623 ± 3.943
3.311LeuPro: 3.311 ± 0.386
6.623LeuGln: 6.623 ± 1.585
1.656LeuArg: 1.656 ± 1.372
13.245LeuSer: 13.245 ± 0.812
6.623LeuThr: 6.623 ± 3.131
8.278LeuVal: 8.278 ± 0.213
1.656LeuTrp: 1.656 ± 1.372
1.656LeuTyr: 1.656 ± 0.986
0.0LeuXaa: 0.0 ± 0.0
Met
1.656MetAla: 1.656 ± 0.986
0.0MetCys: 0.0 ± 0.0
1.656MetAsp: 1.656 ± 0.986
1.656MetGlu: 1.656 ± 1.372
3.311MetPhe: 3.311 ± 1.971
1.656MetGly: 1.656 ± 0.986
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
1.656MetLys: 1.656 ± 1.372
3.311MetLeu: 3.311 ± 0.386
1.656MetMet: 1.656 ± 0.765
0.0MetAsn: 0.0 ± 0.0
3.311MetPro: 3.311 ± 1.971
1.656MetGln: 1.656 ± 0.986
1.656MetArg: 1.656 ± 0.986
3.311MetSer: 3.311 ± 1.971
1.656MetThr: 1.656 ± 0.986
1.656MetVal: 1.656 ± 1.372
0.0MetTrp: 0.0 ± 0.0
3.311MetTyr: 3.311 ± 1.971
0.0MetXaa: 0.0 ± 0.0
Asn
3.311AsnAla: 3.311 ± 1.971
0.0AsnCys: 0.0 ± 0.0
0.0AsnAsp: 0.0 ± 0.0
0.0AsnGlu: 0.0 ± 0.0
1.656AsnPhe: 1.656 ± 0.986
9.934AsnGly: 9.934 ± 3.556
1.656AsnHis: 1.656 ± 1.372
0.0AsnIle: 0.0 ± 0.0
0.0AsnLys: 0.0 ± 0.0
6.623AsnLeu: 6.623 ± 3.943
3.311AsnMet: 3.311 ± 1.971
1.656AsnAsn: 1.656 ± 0.986
1.656AsnPro: 1.656 ± 0.986
1.656AsnGln: 1.656 ± 0.986
0.0AsnArg: 0.0 ± 0.0
3.311AsnSer: 3.311 ± 0.386
4.967AsnThr: 4.967 ± 0.599
9.934AsnVal: 9.934 ± 1.198
0.0AsnTrp: 0.0 ± 0.0
0.0AsnTyr: 0.0 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
8.278ProAla: 8.278 ± 2.57
0.0ProCys: 0.0 ± 0.0
0.0ProAsp: 0.0 ± 0.0
1.656ProGlu: 1.656 ± 1.372
0.0ProPhe: 0.0 ± 0.0
1.656ProGly: 1.656 ± 0.986
0.0ProHis: 0.0 ± 0.0
3.311ProIle: 3.311 ± 0.386
3.311ProLys: 3.311 ± 0.386
6.623ProLeu: 6.623 ± 1.585
0.0ProMet: 0.0 ± 0.0
3.311ProAsn: 3.311 ± 1.971
1.656ProPro: 1.656 ± 0.986
1.656ProGln: 1.656 ± 0.986
6.623ProArg: 6.623 ± 0.773
6.623ProSer: 6.623 ± 1.585
4.967ProThr: 4.967 ± 2.957
0.0ProVal: 0.0 ± 0.0
0.0ProTrp: 0.0 ± 0.0
1.656ProTyr: 1.656 ± 0.986
0.0ProXaa: 0.0 ± 0.0
Gln
1.656GlnAla: 1.656 ± 1.372
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
3.311GlnGlu: 3.311 ± 1.971
1.656GlnPhe: 1.656 ± 0.986
4.967GlnGly: 4.967 ± 0.599
0.0GlnHis: 0.0 ± 0.0
4.967GlnIle: 4.967 ± 1.759
1.656GlnLys: 1.656 ± 1.372
3.311GlnLeu: 3.311 ± 0.386
1.656GlnMet: 1.656 ± 0.986
0.0GlnAsn: 0.0 ± 0.0
1.656GlnPro: 1.656 ± 0.986
0.0GlnGln: 0.0 ± 0.0
1.656GlnArg: 1.656 ± 0.986
0.0GlnSer: 0.0 ± 0.0
4.967GlnThr: 4.967 ± 2.957
1.656GlnVal: 1.656 ± 0.986
0.0GlnTrp: 0.0 ± 0.0
1.656GlnTyr: 1.656 ± 1.372
0.0GlnXaa: 0.0 ± 0.0
Arg
1.656ArgAla: 1.656 ± 1.372
1.656ArgCys: 1.656 ± 0.986
3.311ArgAsp: 3.311 ± 1.971
1.656ArgGlu: 1.656 ± 1.372
1.656ArgPhe: 1.656 ± 1.372
3.311ArgGly: 3.311 ± 2.744
0.0ArgHis: 0.0 ± 0.0
1.656ArgIle: 1.656 ± 1.372
4.967ArgLys: 4.967 ± 0.599
4.967ArgLeu: 4.967 ± 0.599
0.0ArgMet: 0.0 ± 0.0
3.311ArgAsn: 3.311 ± 0.386
1.656ArgPro: 1.656 ± 1.372
1.656ArgGln: 1.656 ± 0.986
0.0ArgArg: 0.0 ± 0.0
3.311ArgSer: 3.311 ± 2.744
3.311ArgThr: 3.311 ± 0.386
1.656ArgVal: 1.656 ± 0.986
1.656ArgTrp: 1.656 ± 1.372
1.656ArgTyr: 1.656 ± 1.372
0.0ArgXaa: 0.0 ± 0.0
Ser
4.967SerAla: 4.967 ± 0.599
0.0SerCys: 0.0 ± 0.0
4.967SerAsp: 4.967 ± 2.957
8.278SerGlu: 8.278 ± 2.145
4.967SerPhe: 4.967 ± 0.599
8.278SerGly: 8.278 ± 2.145
0.0SerHis: 0.0 ± 0.0
1.656SerIle: 1.656 ± 1.372
1.656SerLys: 1.656 ± 1.372
8.278SerLeu: 8.278 ± 2.145
1.656SerMet: 1.656 ± 0.986
3.311SerAsn: 3.311 ± 0.386
3.311SerPro: 3.311 ± 1.971
1.656SerGln: 1.656 ± 1.372
0.0SerArg: 0.0 ± 0.0
9.934SerSer: 9.934 ± 1.198
6.623SerThr: 6.623 ± 0.773
6.623SerVal: 6.623 ± 3.943
4.967SerTrp: 4.967 ± 1.759
1.656SerTyr: 1.656 ± 0.986
0.0SerXaa: 0.0 ± 0.0
Thr
4.967ThrAla: 4.967 ± 1.759
0.0ThrCys: 0.0 ± 0.0
9.934ThrAsp: 9.934 ± 5.914
1.656ThrGlu: 1.656 ± 0.986
1.656ThrPhe: 1.656 ± 0.986
4.967ThrGly: 4.967 ± 1.759
1.656ThrHis: 1.656 ± 0.986
3.311ThrIle: 3.311 ± 0.386
3.311ThrLys: 3.311 ± 0.386
1.656ThrLeu: 1.656 ± 0.986
4.967ThrMet: 4.967 ± 0.591
8.278ThrAsn: 8.278 ± 2.57
1.656ThrPro: 1.656 ± 0.986
1.656ThrGln: 1.656 ± 0.986
4.967ThrArg: 4.967 ± 0.599
4.967ThrSer: 4.967 ± 0.599
1.656ThrThr: 1.656 ± 1.372
4.967ThrVal: 4.967 ± 0.599
1.656ThrTrp: 1.656 ± 1.372
4.967ThrTyr: 4.967 ± 2.957
0.0ThrXaa: 0.0 ± 0.0
Val
1.656ValAla: 1.656 ± 0.986
0.0ValCys: 0.0 ± 0.0
0.0ValAsp: 0.0 ± 0.0
4.967ValGlu: 4.967 ± 2.957
6.623ValPhe: 6.623 ± 0.773
4.967ValGly: 4.967 ± 0.599
4.967ValHis: 4.967 ± 0.599
8.278ValIle: 8.278 ± 2.57
3.311ValLys: 3.311 ± 2.744
1.656ValLeu: 1.656 ± 0.986
4.967ValMet: 4.967 ± 0.599
1.656ValAsn: 1.656 ± 0.986
4.967ValPro: 4.967 ± 0.599
1.656ValGln: 1.656 ± 0.986
3.311ValArg: 3.311 ± 2.744
6.623ValSer: 6.623 ± 1.585
3.311ValThr: 3.311 ± 1.971
6.623ValVal: 6.623 ± 0.773
4.967ValTrp: 4.967 ± 1.759
0.0ValTyr: 0.0 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
3.311TrpGlu: 3.311 ± 2.744
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
1.656TrpLys: 1.656 ± 1.372
4.967TrpLeu: 4.967 ± 4.116
1.656TrpMet: 1.656 ± 0.986
3.311TrpAsn: 3.311 ± 0.386
0.0TrpPro: 0.0 ± 0.0
1.656TrpGln: 1.656 ± 1.372
1.656TrpArg: 1.656 ± 1.372
0.0TrpSer: 0.0 ± 0.0
1.656TrpThr: 1.656 ± 1.372
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.0TyrAla: 0.0 ± 0.0
0.0TyrCys: 0.0 ± 0.0
3.311TyrAsp: 3.311 ± 1.971
1.656TyrGlu: 1.656 ± 1.372
3.311TyrPhe: 3.311 ± 1.971
3.311TyrGly: 3.311 ± 1.971
1.656TyrHis: 1.656 ± 1.372
0.0TyrIle: 0.0 ± 0.0
4.967TyrLys: 4.967 ± 0.599
0.0TyrLeu: 0.0 ± 0.0
3.311TyrMet: 3.311 ± 0.386
4.967TyrAsn: 4.967 ± 2.957
3.311TyrPro: 3.311 ± 0.386
1.656TyrGln: 1.656 ± 0.986
1.656TyrArg: 1.656 ± 0.986
1.656TyrSer: 1.656 ± 0.986
1.656TyrThr: 1.656 ± 1.372
1.656TyrVal: 1.656 ± 0.986
0.0TyrTrp: 0.0 ± 0.0
4.967TyrTyr: 4.967 ± 0.599
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (605 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski