Capybara microvirus Cap1_SP_90

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W418|A0A4P8W418_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_90 OX=2584797 PE=4 SV=1
MM1 pKa = 7.37FPTVEE6 pKa = 4.44KK7 pKa = 9.41FQCSRR12 pKa = 11.84GCPVYY17 pKa = 10.05ATVDD21 pKa = 3.62RR22 pKa = 11.84EE23 pKa = 4.18VLIDD27 pKa = 3.74SDD29 pKa = 4.1GLAVPIIEE37 pKa = 4.41KK38 pKa = 9.52TVIDD42 pKa = 3.93MTTEE46 pKa = 3.82EE47 pKa = 4.69SIKK50 pKa = 10.99SLGTGLSLKK59 pKa = 10.43DD60 pKa = 3.45ALEE63 pKa = 4.32AGISIDD69 pKa = 3.75RR70 pKa = 11.84VNTQVLSTSRR80 pKa = 11.84ADD82 pKa = 3.55NLEE85 pKa = 4.16KK86 pKa = 10.78YY87 pKa = 10.41VEE89 pKa = 5.02LINKK93 pKa = 9.81DD94 pKa = 2.92IEE96 pKa = 4.31RR97 pKa = 11.84TLNEE101 pKa = 4.11SKK103 pKa = 11.05

Molecular weight: 11.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVN4|A0A4V1FVN4_9VIRU Replication initiator protein OS=Capybara microvirus Cap1_SP_90 OX=2584797 PE=4 SV=1
MM1 pKa = 7.97CYY3 pKa = 9.99NPRR6 pKa = 11.84VIRR9 pKa = 11.84NPTKK13 pKa = 10.83DD14 pKa = 3.98LVPTDD19 pKa = 3.68ALQITVSCGEE29 pKa = 4.08CEE31 pKa = 3.74EE32 pKa = 4.6CRR34 pKa = 11.84NHH36 pKa = 6.65RR37 pKa = 11.84RR38 pKa = 11.84NEE40 pKa = 4.08MVFRR44 pKa = 11.84TYY46 pKa = 10.9EE47 pKa = 4.25QMLEE51 pKa = 4.07DD52 pKa = 3.64QKK54 pKa = 11.4KK55 pKa = 10.83GYY57 pKa = 8.55IQCFFTLTYY66 pKa = 11.07NDD68 pKa = 3.82DD69 pKa = 4.0CLPHH73 pKa = 6.35FKK75 pKa = 10.34CSSYY79 pKa = 10.95NIPCFSPDD87 pKa = 4.06DD88 pKa = 3.47ISAFRR93 pKa = 11.84GHH95 pKa = 6.43LQDD98 pKa = 4.29YY99 pKa = 10.69LLDD102 pKa = 4.23RR103 pKa = 11.84YY104 pKa = 10.07GIKK107 pKa = 10.38SSTYY111 pKa = 9.97LICAEE116 pKa = 4.38YY117 pKa = 10.75GSNTQRR123 pKa = 11.84PHH125 pKa = 4.14YY126 pKa = 9.23HH127 pKa = 7.15CYY129 pKa = 9.2FACPSKK135 pKa = 11.1GVITPRR141 pKa = 11.84FTKK144 pKa = 9.29KK145 pKa = 9.17TGITSEE151 pKa = 4.36SNLPVLTGSILHH163 pKa = 6.49SIVKK167 pKa = 9.27EE168 pKa = 3.66CWTYY172 pKa = 11.25GFLFPRR178 pKa = 11.84FPQGGRR184 pKa = 11.84DD185 pKa = 3.39STGYY189 pKa = 7.94NHH191 pKa = 7.33KK192 pKa = 10.46PFVLTGDD199 pKa = 3.33VTGAAKK205 pKa = 10.61YY206 pKa = 8.54IAKK209 pKa = 9.49YY210 pKa = 8.82VCKK213 pKa = 10.44DD214 pKa = 3.17LALLEE219 pKa = 4.66RR220 pKa = 11.84PDD222 pKa = 3.56VQQFIAEE229 pKa = 4.87FKK231 pKa = 10.44NKK233 pKa = 10.27LNGKK237 pKa = 8.82HH238 pKa = 6.92DD239 pKa = 3.65IYY241 pKa = 11.51KK242 pKa = 10.34KK243 pKa = 8.48FQKK246 pKa = 10.19VSSLMRR252 pKa = 11.84CSQGFGKK259 pKa = 9.91CICDD263 pKa = 3.38KK264 pKa = 10.94VKK266 pKa = 10.98SVDD269 pKa = 3.93DD270 pKa = 3.79IKK272 pKa = 11.61NGVTTNLYY280 pKa = 5.9PTHH283 pKa = 7.05KK284 pKa = 9.96IAVPQYY290 pKa = 9.64IVRR293 pKa = 11.84KK294 pKa = 6.81LTRR297 pKa = 11.84VAHH300 pKa = 5.68YY301 pKa = 9.97IKK303 pKa = 10.55EE304 pKa = 4.16DD305 pKa = 3.32ASGFKK310 pKa = 10.1YY311 pKa = 10.54LKK313 pKa = 10.06PKK315 pKa = 9.84VRR317 pKa = 11.84YY318 pKa = 8.9EE319 pKa = 3.59LTEE322 pKa = 4.12FGKK325 pKa = 10.43EE326 pKa = 4.03VYY328 pKa = 10.01KK329 pKa = 10.82EE330 pKa = 4.24SIKK333 pKa = 10.81HH334 pKa = 5.13QIKK337 pKa = 10.61NLTKK341 pKa = 10.41SLHH344 pKa = 6.5DD345 pKa = 4.04WNPSIDD351 pKa = 3.71AQSIATYY358 pKa = 10.42AVVYY362 pKa = 9.34RR363 pKa = 11.84NRR365 pKa = 11.84MNPRR369 pKa = 11.84HH370 pKa = 5.5STIKK374 pKa = 10.74DD375 pKa = 3.09AFTCEE380 pKa = 3.81LTSADD385 pKa = 4.01FFTGLEE391 pKa = 4.11SLSRR395 pKa = 11.84MMSKK399 pKa = 10.66ALPYY403 pKa = 10.45KK404 pKa = 10.03FAHH407 pKa = 6.65LDD409 pKa = 3.72YY410 pKa = 11.2VKK412 pKa = 10.61LPQSPLVNDD421 pKa = 3.67DD422 pKa = 3.57VYY424 pKa = 11.45YY425 pKa = 10.93HH426 pKa = 7.34LDD428 pKa = 2.94LGYY431 pKa = 10.64RR432 pKa = 11.84FNDD435 pKa = 4.39FKK437 pKa = 11.23CFEE440 pKa = 4.58GFDD443 pKa = 4.89DD444 pKa = 5.22IYY446 pKa = 11.45DD447 pKa = 3.81SYY449 pKa = 12.2VEE451 pKa = 4.04YY452 pKa = 11.11NNKK455 pKa = 9.3KK456 pKa = 10.11KK457 pKa = 10.76KK458 pKa = 10.39EE459 pKa = 3.9NLEE462 pKa = 3.91LKK464 pKa = 9.95AAHH467 pKa = 5.98AQYY470 pKa = 10.55IKK472 pKa = 10.57SLKK475 pKa = 9.05EE476 pKa = 4.04HH477 pKa = 6.96FSHH480 pKa = 7.42TEE482 pKa = 3.49NNNNNKK488 pKa = 9.05YY489 pKa = 10.27RR490 pKa = 11.84SLCFRR495 pKa = 11.84QQ496 pKa = 3.3

Molecular weight: 57.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1739

103

733

434.8

48.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.383 ± 1.585

1.725 ± 0.771

6.21 ± 0.238

5.003 ± 0.496

4.485 ± 0.538

5.808 ± 0.707

1.783 ± 0.674

5.463 ± 0.579

6.153 ± 1.334

8.338 ± 0.279

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.358 ± 0.384

6.038 ± 0.557

4.485 ± 0.542

3.968 ± 0.584

4.428 ± 0.169

8.626 ± 0.718

6.671 ± 0.5

5.693 ± 0.319

0.805 ± 0.238

5.578 ± 0.624
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski