Amino acid dipepetide frequency for Botryosphaeria parva (strain UCR-NP2) (Grapevine canker fungus) (Neofusicoccum parvum)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	12.861AlaAla: 12.861 ± 0.096	1.173AlaCys: 1.173 ± 0.018	5.395AlaAsp: 5.395 ± 0.037	5.948AlaGlu: 5.948 ± 0.05	3.649AlaPhe: 3.649 ± 0.03	7.218AlaGly: 7.218 ± 0.052	2.055AlaHis: 2.055 ± 0.025	4.341AlaIle: 4.341 ± 0.034	4.476AlaLys: 4.476 ± 0.041	8.856AlaLeu: 8.856 ± 0.061	2.163AlaMet: 2.163 ± 0.023	3.296AlaAsn: 3.296 ± 0.029	5.484AlaPro: 5.484 ± 0.05	3.736AlaGln: 3.736 ± 0.031	5.496AlaArg: 5.496 ± 0.045	7.446AlaSer: 7.446 ± 0.052	5.805AlaThr: 5.805 ± 0.038	6.452AlaVal: 6.452 ± 0.048	1.425AlaTrp: 1.425 ± 0.017	2.522AlaTyr: 2.522 ± 0.027	0.0AlaXaa: 0.0 ± 0.0
Cys	1.045CysAla: 1.045 ± 0.018	0.204CysCys: 0.204 ± 0.007	0.612CysAsp: 0.612 ± 0.013	0.563CysGlu: 0.563 ± 0.011	0.52CysPhe: 0.52 ± 0.012	0.926CysGly: 0.926 ± 0.017	0.277CysHis: 0.277 ± 0.007	0.632CysIle: 0.632 ± 0.012	0.469CysLys: 0.469 ± 0.011	1.093CysLeu: 1.093 ± 0.018	0.275CysMet: 0.275 ± 0.008	0.405CysAsn: 0.405 ± 0.01	0.607CysPro: 0.607 ± 0.014	0.383CysGln: 0.383 ± 0.01	0.66CysArg: 0.66 ± 0.012	0.799CysSer: 0.799 ± 0.013	0.657CysThr: 0.657 ± 0.014	0.82CysVal: 0.82 ± 0.013	0.186CysTrp: 0.186 ± 0.006	0.363CysTyr: 0.363 ± 0.01	0.0CysXaa: 0.0 ± 0.0
Asp	5.906AspAla: 5.906 ± 0.048	0.609AspCys: 0.609 ± 0.013	4.636AspAsp: 4.636 ± 0.057	4.736AspGlu: 4.736 ± 0.052	2.361AspPhe: 2.361 ± 0.025	4.613AspGly: 4.613 ± 0.038	1.151AspHis: 1.151 ± 0.015	2.819AspIle: 2.819 ± 0.028	2.486AspLys: 2.486 ± 0.03	4.969AspLeu: 4.969 ± 0.039	1.256AspMet: 1.256 ± 0.015	1.785AspAsn: 1.785 ± 0.025	3.525AspPro: 3.525 ± 0.03	1.791AspGln: 1.791 ± 0.02	2.931AspArg: 2.931 ± 0.029	3.748AspSer: 3.748 ± 0.036	2.894AspThr: 2.894 ± 0.025	4.138AspVal: 4.138 ± 0.033	0.964AspTrp: 0.964 ± 0.015	1.711AspTyr: 1.711 ± 0.021	0.0AspXaa: 0.0 ± 0.0
Glu	5.917GluAla: 5.917 ± 0.045	0.555GluCys: 0.555 ± 0.012	4.291GluAsp: 4.291 ± 0.045	5.799GluGlu: 5.799 ± 0.068	1.97GluPhe: 1.97 ± 0.02	4.067GluGly: 4.067 ± 0.031	1.413GluHis: 1.413 ± 0.019	2.867GluIle: 2.867 ± 0.024	4.036GluLys: 4.036 ± 0.046	5.338GluLeu: 5.338 ± 0.045	1.516GluMet: 1.516 ± 0.019	2.142GluAsn: 2.142 ± 0.028	2.702GluPro: 2.702 ± 0.034	2.54GluGln: 2.54 ± 0.029	4.059GluArg: 4.059 ± 0.04	3.642GluSer: 3.642 ± 0.041	3.258GluThr: 3.258 ± 0.029	3.74GluVal: 3.74 ± 0.03	0.959GluTrp: 0.959 ± 0.015	1.681GluTyr: 1.681 ± 0.02	0.0GluXaa: 0.0 ± 0.0
Phe	3.605PheAla: 3.605 ± 0.031	0.541PheCys: 0.541 ± 0.012	2.448PheAsp: 2.448 ± 0.026	2.221PheGlu: 2.221 ± 0.025	1.801PhePhe: 1.801 ± 0.024	3.079PheGly: 3.079 ± 0.029	0.86PheHis: 0.86 ± 0.015	1.745PheIle: 1.745 ± 0.021	1.559PheLys: 1.559 ± 0.021	3.445PheLeu: 3.445 ± 0.034	0.817PheMet: 0.817 ± 0.013	1.505PheAsn: 1.505 ± 0.021	1.905PhePro: 1.905 ± 0.023	1.323PheGln: 1.323 ± 0.018	1.891PheArg: 1.891 ± 0.023	2.836PheSer: 2.836 ± 0.028	2.255PheThr: 2.255 ± 0.024	2.681PheVal: 2.681 ± 0.03	0.687PheTrp: 0.687 ± 0.014	1.206PheTyr: 1.206 ± 0.017	0.0PheXaa: 0.0 ± 0.0
Gly	6.755GlyAla: 6.755 ± 0.05	0.886GlyCys: 0.886 ± 0.015	3.964GlyAsp: 3.964 ± 0.035	4.083GlyGlu: 4.083 ± 0.037	3.043GlyPhe: 3.043 ± 0.031	6.904GlyGly: 6.904 ± 0.076	1.626GlyHis: 1.626 ± 0.02	3.482GlyIle: 3.482 ± 0.034	3.666GlyLys: 3.666 ± 0.037	6.21GlyLeu: 6.21 ± 0.047	1.704GlyMet: 1.704 ± 0.024	2.536GlyAsn: 2.536 ± 0.032	3.347GlyPro: 3.347 ± 0.034	2.507GlyGln: 2.507 ± 0.027	4.153GlyArg: 4.153 ± 0.035	5.585GlySer: 5.585 ± 0.045	4.227GlyThr: 4.227 ± 0.037	4.991GlyVal: 4.991 ± 0.043	1.308GlyTrp: 1.308 ± 0.018	2.264GlyTyr: 2.264 ± 0.024	0.0GlyXaa: 0.0 ± 0.0
His	2.132HisAla: 2.132 ± 0.025	0.306HisCys: 0.306 ± 0.009	1.269HisAsp: 1.269 ± 0.018	1.282HisGlu: 1.282 ± 0.019	0.934HisPhe: 0.934 ± 0.014	1.696HisGly: 1.696 ± 0.023	0.822HisHis: 0.822 ± 0.018	1.068HisIle: 1.068 ± 0.016	0.861HisLys: 0.861 ± 0.016	2.067HisLeu: 2.067 ± 0.024	0.485HisMet: 0.485 ± 0.011	0.758HisAsn: 0.758 ± 0.013	1.557HisPro: 1.557 ± 0.018	0.841HisGln: 0.841 ± 0.016	1.382HisArg: 1.382 ± 0.02	1.517HisSer: 1.517 ± 0.023	1.211HisThr: 1.211 ± 0.019	1.473HisVal: 1.473 ± 0.018	0.35HisTrp: 0.35 ± 0.009	0.707HisTyr: 0.707 ± 0.015	0.0HisXaa: 0.0 ± 0.0
Ile	4.317IleAla: 4.317 ± 0.037	0.652IleCys: 0.652 ± 0.012	2.774IleAsp: 2.774 ± 0.027	2.685IleGlu: 2.685 ± 0.027	1.903IlePhe: 1.903 ± 0.023	3.197IleGly: 3.197 ± 0.032	1.071IleHis: 1.071 ± 0.017	2.299IleIle: 2.299 ± 0.03	2.132IleLys: 2.132 ± 0.024	4.077IleLeu: 4.077 ± 0.038	0.993IleMet: 0.993 ± 0.016	1.758IleAsn: 1.758 ± 0.023	2.729IlePro: 2.729 ± 0.023	1.633IleGln: 1.633 ± 0.022	2.504IleArg: 2.504 ± 0.024	3.243IleSer: 3.243 ± 0.029	2.819IleThr: 2.819 ± 0.023	3.182IleVal: 3.182 ± 0.028	0.684IleTrp: 0.684 ± 0.014	1.385IleTyr: 1.385 ± 0.019	0.0IleXaa: 0.0 ± 0.0
Lys	4.604LysAla: 4.604 ± 0.043	0.432LysCys: 0.432 ± 0.009	2.907LysAsp: 2.907 ± 0.03	3.541LysGlu: 3.541 ± 0.036	1.493LysPhe: 1.493 ± 0.019	3.093LysGly: 3.093 ± 0.033	1.128LysHis: 1.128 ± 0.015	2.176LysIle: 2.176 ± 0.024	3.674LysLys: 3.674 ± 0.058	4.046LysLeu: 4.046 ± 0.039	1.05LysMet: 1.05 ± 0.017	1.746LysAsn: 1.746 ± 0.026	2.656LysPro: 2.656 ± 0.029	1.885LysGln: 1.885 ± 0.023	3.29LysArg: 3.29 ± 0.036	3.057LysSer: 3.057 ± 0.031	2.841LysThr: 2.841 ± 0.029	2.847LysVal: 2.847 ± 0.031	0.671LysTrp: 0.671 ± 0.012	1.385LysTyr: 1.385 ± 0.019	0.0LysXaa: 0.0 ± 0.0
Leu	8.696LeuAla: 8.696 ± 0.057	1.101LeuCys: 1.101 ± 0.017	5.238LeuAsp: 5.238 ± 0.039	5.334LeuGlu: 5.334 ± 0.046	3.423LeuPhe: 3.423 ± 0.033	6.035LeuGly: 6.035 ± 0.043	2.123LeuHis: 2.123 ± 0.02	3.659LeuIle: 3.659 ± 0.034	4.098LeuLys: 4.098 ± 0.036	8.088LeuLeu: 8.088 ± 0.061	1.785LeuMet: 1.785 ± 0.018	3.082LeuAsn: 3.082 ± 0.027	5.148LeuPro: 5.148 ± 0.038	3.473LeuGln: 3.473 ± 0.033	5.631LeuArg: 5.631 ± 0.044	6.506LeuSer: 6.506 ± 0.048	4.855LeuThr: 4.855 ± 0.033	5.603LeuVal: 5.603 ± 0.045	1.209LeuTrp: 1.209 ± 0.018	2.41LeuTyr: 2.41 ± 0.028	0.0LeuXaa: 0.0 ± 0.0
Met	2.404MetAla: 2.404 ± 0.024	0.248MetCys: 0.248 ± 0.008	1.271MetAsp: 1.271 ± 0.017	1.261MetGlu: 1.261 ± 0.017	0.775MetPhe: 0.775 ± 0.013	1.554MetGly: 1.554 ± 0.022	0.479MetHis: 0.479 ± 0.011	0.957MetIle: 0.957 ± 0.016	1.028MetLys: 1.028 ± 0.017	1.888MetLeu: 1.888 ± 0.022	0.568MetMet: 0.568 ± 0.012	0.776MetAsn: 0.776 ± 0.017	1.25MetPro: 1.25 ± 0.02	0.864MetGln: 0.864 ± 0.015	1.291MetArg: 1.291 ± 0.019	1.642MetSer: 1.642 ± 0.018	1.222MetThr: 1.222 ± 0.018	1.349MetVal: 1.349 ± 0.019	0.297MetTrp: 0.297 ± 0.009	0.543MetTyr: 0.543 ± 0.012	0.0MetXaa: 0.0 ± 0.0
Asn	3.409AsnAla: 3.409 ± 0.034	0.418AsnCys: 0.418 ± 0.01	1.918AsnAsp: 1.918 ± 0.024	1.922AsnGlu: 1.922 ± 0.024	1.42AsnPhe: 1.42 ± 0.019	3.11AsnGly: 3.11 ± 0.036	0.757AsnHis: 0.757 ± 0.015	1.887AsnIle: 1.887 ± 0.023	1.536AsnLys: 1.536 ± 0.022	3.051AsnLeu: 3.051 ± 0.03	0.81AsnMet: 0.81 ± 0.016	1.436AsnAsn: 1.436 ± 0.024	2.312AsnPro: 2.312 ± 0.029	1.187AsnGln: 1.187 ± 0.018	1.689AsnArg: 1.689 ± 0.02	2.357AsnSer: 2.357 ± 0.031	2.131AsnThr: 2.131 ± 0.027	2.38AsnVal: 2.38 ± 0.025	0.582AsnTrp: 0.582 ± 0.012	1.111AsnTyr: 1.111 ± 0.017	0.0AsnXaa: 0.0 ± 0.0
Pro	6.138ProAla: 6.138 ± 0.057	0.443ProCys: 0.443 ± 0.012	3.388ProAsp: 3.388 ± 0.033	3.764ProGlu: 3.764 ± 0.035	2.045ProPhe: 2.045 ± 0.021	3.987ProGly: 3.987 ± 0.037	1.305ProHis: 1.305 ± 0.02	2.253ProIle: 2.253 ± 0.026	2.526ProLys: 2.526 ± 0.031	4.488ProLeu: 4.488 ± 0.037	0.998ProMet: 0.998 ± 0.015	2.023ProAsn: 2.023 ± 0.025	4.553ProPro: 4.553 ± 0.062	2.251ProGln: 2.251 ± 0.027	3.061ProArg: 3.061 ± 0.028	4.923ProSer: 4.923 ± 0.051	3.703ProThr: 3.703 ± 0.033	3.482ProVal: 3.482 ± 0.036	0.759ProTrp: 0.759 ± 0.015	1.503ProTyr: 1.503 ± 0.021	0.0ProXaa: 0.0 ± 0.0
Gln	3.558GlnAla: 3.558 ± 0.03	0.411GlnCys: 0.411 ± 0.01	1.979GlnAsp: 1.979 ± 0.023	2.298GlnGlu: 2.298 ± 0.023	1.244GlnPhe: 1.244 ± 0.018	2.248GlnGly: 2.248 ± 0.024	1.016GlnHis: 1.016 ± 0.017	1.727GlnIle: 1.727 ± 0.019	1.908GlnLys: 1.908 ± 0.026	3.363GlnLeu: 3.363 ± 0.032	0.87GlnMet: 0.87 ± 0.015	1.397GlnAsn: 1.397 ± 0.019	2.336GlnPro: 2.336 ± 0.03	2.429GlnGln: 2.429 ± 0.043	2.506GlnArg: 2.506 ± 0.027	2.5GlnSer: 2.5 ± 0.025	2.105GlnThr: 2.105 ± 0.023	2.09GlnVal: 2.09 ± 0.021	0.572GlnTrp: 0.572 ± 0.011	1.138GlnTyr: 1.138 ± 0.016	0.0GlnXaa: 0.0 ± 0.0
Arg	5.319ArgAla: 5.319 ± 0.039	0.629ArgCys: 0.629 ± 0.012	3.346ArgAsp: 3.346 ± 0.031	3.786ArgGlu: 3.786 ± 0.039	2.165ArgPhe: 2.165 ± 0.023	3.761ArgGly: 3.761 ± 0.031	1.39ArgHis: 1.39 ± 0.019	2.702ArgIle: 2.702 ± 0.026	3.315ArgLys: 3.315 ± 0.037	5.27ArgLeu: 5.27 ± 0.042	1.297ArgMet: 1.297 ± 0.019	2.053ArgAsn: 2.053 ± 0.023	3.045ArgPro: 3.045 ± 0.029	2.358ArgGln: 2.358 ± 0.026	4.66ArgArg: 4.66 ± 0.046	3.921ArgSer: 3.921 ± 0.036	3.087ArgThr: 3.087 ± 0.026	3.505ArgVal: 3.505 ± 0.024	0.996ArgTrp: 0.996 ± 0.017	1.617ArgTyr: 1.617 ± 0.02	0.0ArgXaa: 0.0 ± 0.0
Ser	7.121SerAla: 7.121 ± 0.05	0.738SerCys: 0.738 ± 0.013	3.901SerAsp: 3.901 ± 0.039	3.62SerGlu: 3.62 ± 0.034	2.858SerPhe: 2.858 ± 0.03	5.462SerGly: 5.462 ± 0.048	1.562SerHis: 1.562 ± 0.02	3.429SerIle: 3.429 ± 0.032	3.328SerLys: 3.328 ± 0.035	6.249SerLeu: 6.249 ± 0.039	1.517SerMet: 1.517 ± 0.019	2.597SerAsn: 2.597 ± 0.03	4.508SerPro: 4.508 ± 0.05	2.574SerGln: 2.574 ± 0.024	3.925SerArg: 3.925 ± 0.032	7.174SerSer: 7.174 ± 0.066	4.892SerThr: 4.892 ± 0.045	4.321SerVal: 4.321 ± 0.037	1.059SerTrp: 1.059 ± 0.016	2.008SerTyr: 2.008 ± 0.024	0.0SerXaa: 0.0 ± 0.0
Thr	5.916ThrAla: 5.916 ± 0.042	0.696ThrCys: 0.696 ± 0.013	2.899ThrAsp: 2.899 ± 0.026	2.911ThrGlu: 2.911 ± 0.023	2.345ThrPhe: 2.345 ± 0.024	4.377ThrGly: 4.377 ± 0.037	1.233ThrHis: 1.233 ± 0.017	2.947ThrIle: 2.947 ± 0.028	2.505ThrLys: 2.505 ± 0.03	5.185ThrLeu: 5.185 ± 0.036	1.123ThrMet: 1.123 ± 0.017	2.072ThrAsn: 2.072 ± 0.027	4.117ThrPro: 4.117 ± 0.047	1.916ThrGln: 1.916 ± 0.02	2.853ThrArg: 2.853 ± 0.028	4.595ThrSer: 4.595 ± 0.039	4.284ThrThr: 4.284 ± 0.045	3.95ThrVal: 3.95 ± 0.035	0.893ThrTrp: 0.893 ± 0.014	1.723ThrTyr: 1.723 ± 0.02	0.0ThrXaa: 0.0 ± 0.0
Val	6.277ValAla: 6.277 ± 0.04	0.845ValCys: 0.845 ± 0.014	4.026ValAsp: 4.026 ± 0.034	4.261ValGlu: 4.261 ± 0.034	2.631ValPhe: 2.631 ± 0.024	4.595ValGly: 4.595 ± 0.04	1.37ValHis: 1.37 ± 0.017	2.898ValIle: 2.898 ± 0.032	2.984ValLys: 2.984 ± 0.031	5.791ValLeu: 5.791 ± 0.038	1.405ValMet: 1.405 ± 0.019	2.247ValAsn: 2.247 ± 0.023	3.705ValPro: 3.705 ± 0.035	2.37ValGln: 2.37 ± 0.024	3.625ValArg: 3.625 ± 0.032	4.345ValSer: 4.345 ± 0.04	3.574ValThr: 3.574 ± 0.034	4.929ValVal: 4.929 ± 0.043	0.971ValTrp: 0.971 ± 0.016	1.891ValTyr: 1.891 ± 0.025	0.0ValXaa: 0.0 ± 0.0
Trp	1.328TrpAla: 1.328 ± 0.018	0.2TrpCys: 0.2 ± 0.008	0.994TrpAsp: 0.994 ± 0.016	0.902TrpGlu: 0.902 ± 0.016	0.591TrpPhe: 0.591 ± 0.012	1.005TrpGly: 1.005 ± 0.018	0.381TrpHis: 0.381 ± 0.011	0.742TrpIle: 0.742 ± 0.013	0.809TrpLys: 0.809 ± 0.014	1.387TrpLeu: 1.387 ± 0.018	0.382TrpMet: 0.382 ± 0.009	0.631TrpAsn: 0.631 ± 0.011	0.625TrpPro: 0.625 ± 0.011	0.573TrpGln: 0.573 ± 0.011	1.028TrpArg: 1.028 ± 0.015	1.037TrpSer: 1.037 ± 0.018	0.99TrpThr: 0.99 ± 0.017	0.989TrpVal: 0.989 ± 0.013	0.291TrpTrp: 0.291 ± 0.009	0.48TrpTyr: 0.48 ± 0.013	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.489TyrAla: 2.489 ± 0.025	0.41TyrCys: 0.41 ± 0.011	1.774TyrAsp: 1.774 ± 0.02	1.577TyrGlu: 1.577 ± 0.022	1.24TyrPhe: 1.24 ± 0.019	2.312TyrGly: 2.312 ± 0.025	0.702TyrHis: 0.702 ± 0.015	1.408TyrIle: 1.408 ± 0.018	1.127TyrLys: 1.127 ± 0.018	2.638TyrLeu: 2.638 ± 0.03	0.651TyrMet: 0.651 ± 0.013	1.175TyrAsn: 1.175 ± 0.017	1.48TyrPro: 1.48 ± 0.022	1.06TyrGln: 1.06 ± 0.017	1.584TyrArg: 1.584 ± 0.018	1.969TyrSer: 1.969 ± 0.027	1.73TyrThr: 1.73 ± 0.026	1.819TyrVal: 1.819 ± 0.021	0.504TyrTrp: 0.504 ± 0.011	1.023TyrTyr: 1.023 ± 0.019	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 10365 proteins (4404707 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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