Amino acid dipepetide frequency for Alternaria brassicicola fusarivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.844AlaAla: 3.844 ± 3.64
0.481AlaCys: 0.481 ± 0.68
3.844AlaAsp: 3.844 ± 1.885
2.883AlaGlu: 2.883 ± 1.414
3.364AlaPhe: 3.364 ± 0.956
2.883AlaGly: 2.883 ± 1.414
1.922AlaHis: 1.922 ± 0.347
4.325AlaIle: 4.325 ± 2.26
4.325AlaLys: 4.325 ± 0.987
7.208AlaLeu: 7.208 ± 1.3
2.403AlaMet: 2.403 ± 0.773
2.403AlaAsn: 2.403 ± 0.773
3.364AlaPro: 3.364 ± 0.628
2.403AlaGln: 2.403 ± 0.773
3.844AlaArg: 3.844 ± 0.694
4.805AlaSer: 4.805 ± 3.319
6.728AlaThr: 6.728 ± 1.338
5.286AlaVal: 5.286 ± 1.226
1.442AlaTrp: 1.442 ± 0.329
1.442AlaTyr: 1.442 ± 0.329
0.0AlaXaa: 0.0 ± 0.0
Cys
0.961CysAla: 0.961 ± 1.359
0.0CysCys: 0.0 ± 0.0
0.961CysAsp: 0.961 ± 2.415
0.961CysGlu: 0.961 ± 2.415
0.481CysPhe: 0.481 ± 0.251
0.481CysGly: 0.481 ± 0.68
0.481CysHis: 0.481 ± 0.251
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
1.442CysLeu: 1.442 ± 2.473
0.0CysMet: 0.0 ± 0.0
0.481CysAsn: 0.481 ± 2.528
0.481CysPro: 0.481 ± 0.251
0.0CysGln: 0.0 ± 0.0
0.481CysArg: 0.481 ± 2.528
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.961CysVal: 0.961 ± 0.471
0.481CysTrp: 0.481 ± 0.251
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.922AspAla: 1.922 ± 0.942
0.961AspCys: 0.961 ± 2.642
0.961AspAsp: 0.961 ± 0.502
4.805AspGlu: 4.805 ± 0.941
3.844AspPhe: 3.844 ± 1.196
1.922AspGly: 1.922 ± 0.347
0.961AspHis: 0.961 ± 0.502
3.364AspIle: 3.364 ± 1.237
3.844AspLys: 3.844 ± 1.196
5.766AspLeu: 5.766 ± 3.014
3.364AspMet: 3.364 ± 0.956
1.922AspAsn: 1.922 ± 2.318
2.403AspPro: 2.403 ± 0.509
0.961AspGln: 0.961 ± 0.471
2.883AspArg: 2.883 ± 0.658
0.481AspSer: 0.481 ± 0.251
1.442AspThr: 1.442 ± 0.753
3.364AspVal: 3.364 ± 1.758
1.922AspTrp: 1.922 ± 0.347
0.961AspTyr: 0.961 ± 0.502
0.0AspXaa: 0.0 ± 0.0
Glu
4.325GluAla: 4.325 ± 0.987
0.961GluCys: 0.961 ± 2.415
2.403GluAsp: 2.403 ± 1.256
6.247GluGlu: 6.247 ± 1.902
0.961GluPhe: 0.961 ± 0.502
3.844GluGly: 3.844 ± 2.752
0.481GluHis: 0.481 ± 0.251
2.883GluIle: 2.883 ± 1.414
6.247GluLys: 6.247 ± 1.902
7.208GluLeu: 7.208 ± 4.089
2.403GluMet: 2.403 ± 0.509
1.922GluAsn: 1.922 ± 0.347
3.364GluPro: 3.364 ± 1.237
1.442GluGln: 1.442 ± 2.473
2.403GluArg: 2.403 ± 0.509
2.883GluSer: 2.883 ± 1.414
2.883GluThr: 2.883 ± 2.068
4.325GluVal: 4.325 ± 0.987
0.961GluTrp: 0.961 ± 0.502
3.364GluTyr: 3.364 ± 0.956
0.0GluXaa: 0.0 ± 0.0
Phe
4.325PheAla: 4.325 ± 1.705
0.481PheCys: 0.481 ± 0.68
2.403PheAsp: 2.403 ± 1.256
3.364PheGlu: 3.364 ± 0.628
1.442PhePhe: 1.442 ± 0.753
2.403PheGly: 2.403 ± 1.256
0.961PheHis: 0.961 ± 0.471
0.961PheIle: 0.961 ± 0.502
4.325PheLys: 4.325 ± 1.705
6.247PheLeu: 6.247 ± 1.677
0.961PheMet: 0.961 ± 2.642
1.922PheAsn: 1.922 ± 1.005
2.403PhePro: 2.403 ± 0.773
1.442PheGln: 1.442 ± 0.753
5.286PheArg: 5.286 ± 1.934
2.403PheSer: 2.403 ± 0.509
2.883PheThr: 2.883 ± 1.414
4.805PheVal: 4.805 ± 1.894
0.0PheTrp: 0.0 ± 0.0
1.922PheTyr: 1.922 ± 0.347
0.0PheXaa: 0.0 ± 0.0
Gly
3.844GlyAla: 3.844 ± 1.091
0.481GlyCys: 0.481 ± 0.251
3.364GlyAsp: 3.364 ± 0.956
2.883GlyGlu: 2.883 ± 0.658
2.883GlyPhe: 2.883 ± 2.316
1.922GlyGly: 1.922 ± 2.318
1.922GlyHis: 1.922 ± 1.005
2.883GlyIle: 2.883 ± 0.658
6.247GlyLys: 6.247 ± 1.491
8.169GlyLeu: 8.169 ± 1.515
0.961GlyMet: 0.961 ± 0.669
0.961GlyAsn: 0.961 ± 0.471
1.922GlyPro: 1.922 ± 1.82
1.442GlyGln: 1.442 ± 0.753
4.325GlyArg: 4.325 ± 1.44
2.403GlySer: 2.403 ± 0.773
3.844GlyThr: 3.844 ± 2.26
4.805GlyVal: 4.805 ± 0.941
1.442GlyTrp: 1.442 ± 1.142
0.961GlyTyr: 0.961 ± 0.471
0.0GlyXaa: 0.0 ± 0.0
His
1.442HisAla: 1.442 ± 0.753
0.0HisCys: 0.0 ± 0.0
0.961HisAsp: 0.961 ± 0.502
0.961HisGlu: 0.961 ± 0.471
0.961HisPhe: 0.961 ± 1.359
0.961HisGly: 0.961 ± 0.502
0.961HisHis: 0.961 ± 0.502
0.0HisIle: 0.0 ± 0.0
0.0HisLys: 0.0 ± 0.0
1.922HisLeu: 1.922 ± 1.005
0.961HisMet: 0.961 ± 0.471
1.922HisAsn: 1.922 ± 0.347
1.442HisPro: 1.442 ± 0.753
0.481HisGln: 0.481 ± 0.251
0.481HisArg: 0.481 ± 0.251
1.922HisSer: 1.922 ± 1.005
0.961HisThr: 0.961 ± 0.502
1.442HisVal: 1.442 ± 0.329
0.481HisTrp: 0.481 ± 0.251
0.481HisTyr: 0.481 ± 0.251
0.0HisXaa: 0.0 ± 0.0
Ile
3.364IleAla: 3.364 ± 1.237
1.442IleCys: 1.442 ± 0.329
2.403IleAsp: 2.403 ± 1.256
2.883IleGlu: 2.883 ± 1.507
4.325IlePhe: 4.325 ± 0.987
0.481IleGly: 0.481 ± 0.68
0.961IleHis: 0.961 ± 0.502
3.844IleIle: 3.844 ± 1.196
3.844IleLys: 3.844 ± 1.091
3.364IleLeu: 3.364 ± 1.758
0.481IleMet: 0.481 ± 0.68
0.481IleAsn: 0.481 ± 0.68
2.403IlePro: 2.403 ± 0.509
1.922IleGln: 1.922 ± 0.347
1.922IleArg: 1.922 ± 1.005
5.286IleSer: 5.286 ± 1.226
3.844IleThr: 3.844 ± 0.694
6.728IleVal: 6.728 ± 1.256
1.442IleTrp: 1.442 ± 0.753
1.922IleTyr: 1.922 ± 1.005
0.0IleXaa: 0.0 ± 0.0
Lys
5.286LysAla: 5.286 ± 1.413
0.961LysCys: 0.961 ± 2.415
2.883LysAsp: 2.883 ± 1.414
7.689LysGlu: 7.689 ± 2.625
1.922LysPhe: 1.922 ± 1.005
4.805LysGly: 4.805 ± 0.941
0.961LysHis: 0.961 ± 1.359
6.247LysIle: 6.247 ± 1.262
6.247LysLys: 6.247 ± 1.862
5.286LysLeu: 5.286 ± 1.932
1.442LysMet: 1.442 ± 0.753
2.403LysAsn: 2.403 ± 1.61
2.883LysPro: 2.883 ± 4.711
1.442LysGln: 1.442 ± 1.142
3.364LysArg: 3.364 ± 0.628
4.325LysSer: 4.325 ± 0.834
2.883LysThr: 2.883 ± 0.724
8.169LysVal: 8.169 ± 1.948
1.922LysTrp: 1.922 ± 0.942
1.922LysTyr: 1.922 ± 1.005
0.0LysXaa: 0.0 ± 0.0
Leu
7.208LeuAla: 7.208 ± 1.295
0.481LeuCys: 0.481 ± 0.68
5.286LeuAsp: 5.286 ± 0.96
4.805LeuGlu: 4.805 ± 1.018
4.325LeuPhe: 4.325 ± 1.89
6.728LeuGly: 6.728 ± 1.913
1.922LeuHis: 1.922 ± 1.005
5.286LeuIle: 5.286 ± 1.934
5.286LeuLys: 5.286 ± 0.96
8.65LeuLeu: 8.65 ± 2.881
1.442LeuMet: 1.442 ± 0.753
4.325LeuAsn: 4.325 ± 0.834
5.766LeuPro: 5.766 ± 1.447
1.442LeuGln: 1.442 ± 0.753
5.286LeuArg: 5.286 ± 1.934
9.611LeuSer: 9.611 ± 6.09
5.766LeuThr: 5.766 ± 1.042
8.65LeuVal: 8.65 ± 1.343
2.883LeuTrp: 2.883 ± 0.724
2.403LeuTyr: 2.403 ± 1.256
0.0LeuXaa: 0.0 ± 0.0
Met
4.325MetAla: 4.325 ± 0.834
0.481MetCys: 0.481 ± 0.251
1.442MetAsp: 1.442 ± 0.753
1.442MetGlu: 1.442 ± 0.329
0.0MetPhe: 0.0 ± 0.0
1.442MetGly: 1.442 ± 0.329
0.481MetHis: 0.481 ± 0.251
1.442MetIle: 1.442 ± 0.753
2.403MetLys: 2.403 ± 0.773
3.844MetLeu: 3.844 ± 0.694
1.922MetMet: 1.922 ± 2.255
0.481MetAsn: 0.481 ± 0.251
0.0MetPro: 0.0 ± 0.0
0.0MetGln: 0.0 ± 0.0
1.442MetArg: 1.442 ± 0.753
2.883MetSer: 2.883 ± 2.316
0.481MetThr: 0.481 ± 0.251
1.442MetVal: 1.442 ± 2.473
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.364AsnAla: 3.364 ± 0.956
0.481AsnCys: 0.481 ± 0.251
1.922AsnAsp: 1.922 ± 2.255
1.442AsnGlu: 1.442 ± 0.753
3.364AsnPhe: 3.364 ± 0.956
1.922AsnGly: 1.922 ± 0.347
0.481AsnHis: 0.481 ± 0.251
2.403AsnIle: 2.403 ± 1.256
1.442AsnLys: 1.442 ± 0.329
3.844AsnLeu: 3.844 ± 0.694
0.481AsnMet: 0.481 ± 0.68
1.442AsnAsn: 1.442 ± 1.142
1.922AsnPro: 1.922 ± 0.347
0.961AsnGln: 0.961 ± 0.502
1.442AsnArg: 1.442 ± 1.142
2.883AsnSer: 2.883 ± 2.847
1.442AsnThr: 1.442 ± 0.329
3.844AsnVal: 3.844 ± 1.091
0.961AsnTrp: 0.961 ± 0.502
0.481AsnTyr: 0.481 ± 0.251
0.0AsnXaa: 0.0 ± 0.0
Pro
2.403ProAla: 2.403 ± 0.773
0.0ProCys: 0.0 ± 0.0
2.883ProAsp: 2.883 ± 0.658
3.364ProGlu: 3.364 ± 1.978
3.364ProPhe: 3.364 ± 2.079
1.922ProGly: 1.922 ± 0.347
0.0ProHis: 0.0 ± 0.0
2.403ProIle: 2.403 ± 0.773
4.805ProLys: 4.805 ± 1.686
4.325ProLeu: 4.325 ± 0.987
0.0ProMet: 0.0 ± 0.0
1.922ProAsn: 1.922 ± 0.347
2.883ProPro: 2.883 ± 1.414
1.442ProGln: 1.442 ± 2.323
2.403ProArg: 2.403 ± 0.509
7.208ProSer: 7.208 ± 1.295
2.403ProThr: 2.403 ± 1.61
4.805ProVal: 4.805 ± 1.894
0.0ProTrp: 0.0 ± 0.0
0.961ProTyr: 0.961 ± 0.502
0.0ProXaa: 0.0 ± 0.0
Gln
0.961GlnAla: 0.961 ± 0.502
0.481GlnCys: 0.481 ± 2.528
0.0GlnAsp: 0.0 ± 0.0
1.922GlnGlu: 1.922 ± 2.318
0.481GlnPhe: 0.481 ± 0.251
2.403GlnGly: 2.403 ± 2.182
0.0GlnHis: 0.0 ± 0.0
0.481GlnIle: 0.481 ± 0.251
1.442GlnLys: 1.442 ± 4.938
3.364GlnLeu: 3.364 ± 0.628
0.961GlnMet: 0.961 ± 0.502
0.961GlnAsn: 0.961 ± 0.471
1.442GlnPro: 1.442 ± 0.329
0.961GlnGln: 0.961 ± 0.471
1.922GlnArg: 1.922 ± 0.347
0.961GlnSer: 0.961 ± 0.471
0.481GlnThr: 0.481 ± 0.251
1.922GlnVal: 1.922 ± 0.347
0.961GlnTrp: 0.961 ± 0.502
0.481GlnTyr: 0.481 ± 0.251
0.0GlnXaa: 0.0 ± 0.0
Arg
2.403ArgAla: 2.403 ± 0.509
0.0ArgCys: 0.0 ± 0.0
3.364ArgAsp: 3.364 ± 0.956
3.844ArgGlu: 3.844 ± 0.694
5.766ArgPhe: 5.766 ± 1.447
3.364ArgGly: 3.364 ± 0.628
2.403ArgHis: 2.403 ± 1.256
3.844ArgIle: 3.844 ± 1.091
3.364ArgLys: 3.364 ± 0.956
3.364ArgLeu: 3.364 ± 0.956
2.403ArgMet: 2.403 ± 0.654
3.364ArgAsn: 3.364 ± 1.758
1.922ArgPro: 1.922 ± 0.347
1.442ArgGln: 1.442 ± 4.938
4.325ArgArg: 4.325 ± 1.836
2.883ArgSer: 2.883 ± 0.658
2.883ArgThr: 2.883 ± 1.507
3.364ArgVal: 3.364 ± 2.139
1.442ArgTrp: 1.442 ± 0.329
1.922ArgTyr: 1.922 ± 1.005
0.0ArgXaa: 0.0 ± 0.0
Ser
5.286SerAla: 5.286 ± 2.175
0.0SerCys: 0.0 ± 0.0
6.247SerAsp: 6.247 ± 1.677
3.364SerGlu: 3.364 ± 2.625
4.805SerPhe: 4.805 ± 0.941
2.883SerGly: 2.883 ± 2.847
1.442SerHis: 1.442 ± 1.142
4.805SerIle: 4.805 ± 1.686
6.247SerLys: 6.247 ± 1.262
5.766SerLeu: 5.766 ± 2.673
1.442SerMet: 1.442 ± 1.554
2.403SerAsn: 2.403 ± 1.256
2.883SerPro: 2.883 ± 0.658
0.481SerGln: 0.481 ± 0.251
6.247SerArg: 6.247 ± 4.151
5.286SerSer: 5.286 ± 4.244
5.286SerThr: 5.286 ± 1.226
4.325SerVal: 4.325 ± 3.565
1.922SerTrp: 1.922 ± 1.005
2.403SerTyr: 2.403 ± 2.182
0.0SerXaa: 0.0 ± 0.0
Thr
4.805ThrAla: 4.805 ± 1.018
0.481ThrCys: 0.481 ± 2.528
1.922ThrAsp: 1.922 ± 0.347
3.364ThrGlu: 3.364 ± 0.956
2.883ThrPhe: 2.883 ± 1.507
8.169ThrGly: 8.169 ± 2.692
1.442ThrHis: 1.442 ± 0.753
3.364ThrIle: 3.364 ± 0.628
0.961ThrLys: 0.961 ± 0.502
5.286ThrLeu: 5.286 ± 1.226
1.922ThrMet: 1.922 ± 0.347
1.922ThrAsn: 1.922 ± 0.347
4.805ThrPro: 4.805 ± 0.941
0.481ThrGln: 0.481 ± 0.251
2.883ThrArg: 2.883 ± 0.658
5.766ThrSer: 5.766 ± 2.009
6.728ThrThr: 6.728 ± 1.256
3.844ThrVal: 3.844 ± 2.752
0.961ThrTrp: 0.961 ± 0.502
1.442ThrTyr: 1.442 ± 0.329
0.0ThrXaa: 0.0 ± 0.0
Val
5.286ValAla: 5.286 ± 0.96
0.481ValCys: 0.481 ± 0.251
3.364ValAsp: 3.364 ± 0.956
3.844ValGlu: 3.844 ± 1.977
3.364ValPhe: 3.364 ± 0.628
5.286ValGly: 5.286 ± 0.96
0.481ValHis: 0.481 ± 0.251
2.403ValIle: 2.403 ± 0.509
6.728ValLys: 6.728 ± 3.124
5.766ValLeu: 5.766 ± 1.639
0.481ValMet: 0.481 ± 0.251
3.844ValAsn: 3.844 ± 0.694
4.325ValPro: 4.325 ± 4.385
2.883ValGln: 2.883 ± 2.068
4.325ValArg: 4.325 ± 1.44
6.728ValSer: 6.728 ± 1.605
10.091ValThr: 10.091 ± 2.952
4.325ValVal: 4.325 ± 0.987
2.883ValTrp: 2.883 ± 0.658
2.883ValTyr: 2.883 ± 0.724
0.0ValXaa: 0.0 ± 0.0
Trp
3.844TrpAla: 3.844 ± 0.694
0.0TrpCys: 0.0 ± 0.0
0.481TrpAsp: 0.481 ± 0.251
0.961TrpGlu: 0.961 ± 0.502
0.961TrpPhe: 0.961 ± 1.359
1.442TrpGly: 1.442 ± 0.753
0.0TrpHis: 0.0 ± 0.0
0.961TrpIle: 0.961 ± 0.471
1.922TrpLys: 1.922 ± 0.942
3.844TrpLeu: 3.844 ± 0.694
0.481TrpMet: 0.481 ± 0.251
0.481TrpAsn: 0.481 ± 0.251
0.961TrpPro: 0.961 ± 0.502
0.0TrpGln: 0.0 ± 0.0
0.481TrpArg: 0.481 ± 0.251
1.922TrpSer: 1.922 ± 1.005
0.961TrpThr: 0.961 ± 0.502
0.481TrpVal: 0.481 ± 0.251
0.961TrpTrp: 0.961 ± 0.471
2.403TrpTyr: 2.403 ± 0.509
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.0TyrAla: 0.0 ± 0.0
0.0TyrCys: 0.0 ± 0.0
0.961TyrAsp: 0.961 ± 0.471
0.481TyrGlu: 0.481 ± 0.68
1.442TyrPhe: 1.442 ± 0.753
2.883TyrGly: 2.883 ± 0.724
0.481TyrHis: 0.481 ± 0.251
1.442TyrIle: 1.442 ± 0.753
3.364TyrLys: 3.364 ± 0.956
2.883TyrLeu: 2.883 ± 1.507
0.961TyrMet: 0.961 ± 0.502
0.961TyrAsn: 0.961 ± 0.502
1.922TyrPro: 1.922 ± 0.347
0.961TyrGln: 0.961 ± 0.471
1.922TyrArg: 1.922 ± 0.347
2.883TyrSer: 2.883 ± 0.724
1.442TyrThr: 1.442 ± 0.753
2.883TyrVal: 2.883 ± 2.201
0.481TyrTrp: 0.481 ± 0.251
0.481TyrTyr: 0.481 ± 0.68
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (2082 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski