Paralcaligenes ureilyticus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Paralcaligenes

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3977 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R3M6U0|A0A4R3M6U0_9BURK Microcin-processing peptidase 1 OS=Paralcaligenes ureilyticus OX=627131 GN=EDC26_104304 PE=3 SV=1
MM1 pKa = 7.03QASNLPIVLIFGPFDD16 pKa = 3.84PSGSSSLPADD26 pKa = 3.52AVTCATLGCHH36 pKa = 6.64ALSTLTAIRR45 pKa = 11.84VQDD48 pKa = 3.47TVGIEE53 pKa = 4.27EE54 pKa = 4.43IQPVAPEE61 pKa = 5.13LIDD64 pKa = 4.11DD65 pKa = 3.92QARR68 pKa = 11.84CLLEE72 pKa = 5.17DD73 pKa = 3.78MAVQAIKK80 pKa = 10.26IGPLYY85 pKa = 10.12TPEE88 pKa = 4.26SVSALAQIAADD99 pKa = 3.87YY100 pKa = 10.28NQVPLVLHH108 pKa = 5.72LTAWPDD114 pKa = 3.18EE115 pKa = 4.23AALEE119 pKa = 5.11DD120 pKa = 4.07IDD122 pKa = 5.78SEE124 pKa = 4.62DD125 pKa = 3.53VLSATLEE132 pKa = 4.1LLLPQTDD139 pKa = 3.47IVIADD144 pKa = 4.08HH145 pKa = 6.65NLMVQWQAEE154 pKa = 4.43GLLSTIDD161 pKa = 3.51AASPAQALLQCGAKK175 pKa = 8.99WVLSTAAPIRR185 pKa = 11.84PGQSAYY191 pKa = 11.1LLQGQEE197 pKa = 3.88NEE199 pKa = 4.29TFNWAWQAPAARR211 pKa = 11.84LHH213 pKa = 6.95DD214 pKa = 4.45ADD216 pKa = 5.26GPLACAVACQLAMGLDD232 pKa = 3.56APQAVEE238 pKa = 4.12AAIKK242 pKa = 10.12QAMPLAANSFQPGMGHH258 pKa = 6.5PLINRR263 pKa = 11.84SPSS266 pKa = 2.98

Molecular weight: 28.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R3LRY7|A0A4R3LRY7_9BURK Filamentous hemagglutinin family protein (Fragment) OS=Paralcaligenes ureilyticus OX=627131 GN=EDC26_1151 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.06QPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.17RR14 pKa = 11.84THH16 pKa = 5.95GFRR19 pKa = 11.84IRR21 pKa = 11.84MKK23 pKa = 9.4TRR25 pKa = 11.84GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3977

0

3977

1301549

30

3014

327.3

35.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.573 ± 0.048

1.004 ± 0.014

5.12 ± 0.03

4.871 ± 0.039

3.701 ± 0.026

8.196 ± 0.049

2.349 ± 0.018

5.473 ± 0.03

3.633 ± 0.03

10.667 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.583 ± 0.019

3.003 ± 0.024

4.976 ± 0.024

3.984 ± 0.026

6.278 ± 0.033

5.931 ± 0.029

5.223 ± 0.031

7.533 ± 0.033

1.385 ± 0.018

2.516 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski