Tomato leaf curl Oman virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E1U825|E1U825_9GEMI C4 OS=Tomato leaf curl Oman virus OX=713949 GN=C4 PE=3 SV=1
MM1 pKa = 7.45PRR3 pKa = 11.84INSFCVNTKK12 pKa = 10.62NIFLTYY18 pKa = 8.67PKK20 pKa = 10.44CPIPKK25 pKa = 9.32EE26 pKa = 3.87QMLEE30 pKa = 3.65ILQSINCPSDD40 pKa = 3.09KK41 pKa = 10.96LFIRR45 pKa = 11.84VSRR48 pKa = 11.84EE49 pKa = 3.34KK50 pKa = 10.76HH51 pKa = 4.81QDD53 pKa = 3.03GSLHH57 pKa = 5.16IHH59 pKa = 6.91ALIQFKK65 pKa = 10.83GKK67 pKa = 10.55AKK69 pKa = 9.97FRR71 pKa = 11.84NPRR74 pKa = 11.84HH75 pKa = 6.16FDD77 pKa = 3.03VTHH80 pKa = 7.17PNNSSQFHH88 pKa = 7.01PNFQGAKK95 pKa = 9.08SSSDD99 pKa = 3.06VKK101 pKa = 11.24SYY103 pKa = 10.82IEE105 pKa = 4.35KK106 pKa = 10.8NGDD109 pKa = 3.67YY110 pKa = 10.33IDD112 pKa = 3.84WGQFQIDD119 pKa = 3.44GRR121 pKa = 11.84SARR124 pKa = 11.84GGQQTANDD132 pKa = 3.91AAAEE136 pKa = 3.92ALNACSAEE144 pKa = 4.05EE145 pKa = 3.76ALSIIRR151 pKa = 11.84EE152 pKa = 4.13KK153 pKa = 10.9LPKK156 pKa = 10.46DD157 pKa = 4.77FIFQYY162 pKa = 11.21HH163 pKa = 5.5NLKK166 pKa = 10.79CNLDD170 pKa = 4.14RR171 pKa = 11.84IFQEE175 pKa = 4.33PPAPYY180 pKa = 9.57ISPFLSSSFNQVPEE194 pKa = 4.07EE195 pKa = 4.2LEE197 pKa = 4.05VWVSEE202 pKa = 4.02NVMSSAARR210 pKa = 11.84PWRR213 pKa = 11.84PNSIIIEE220 pKa = 4.33GDD222 pKa = 3.13SRR224 pKa = 11.84TGKK227 pKa = 8.52TMWARR232 pKa = 11.84SLGPHH237 pKa = 6.71NYY239 pKa = 10.18LCGHH243 pKa = 7.38LDD245 pKa = 4.18LSPKK249 pKa = 10.2VYY251 pKa = 9.81STDD254 pKa = 2.18AWYY257 pKa = 10.92NVIDD261 pKa = 5.2DD262 pKa = 4.41VDD264 pKa = 3.61PHH266 pKa = 5.85YY267 pKa = 11.0LKK269 pKa = 10.7HH270 pKa = 6.2FKK272 pKa = 10.7EE273 pKa = 4.46FMGAQRR279 pKa = 11.84DD280 pKa = 3.81WQSNTKK286 pKa = 9.26YY287 pKa = 10.63GKK289 pKa = 9.49PIQIKK294 pKa = 10.42GGIPTIFLCNPGPTSSYY311 pKa = 11.03KK312 pKa = 10.55EE313 pKa = 3.94YY314 pKa = 10.94LDD316 pKa = 3.59EE317 pKa = 4.85EE318 pKa = 4.69KK319 pKa = 11.04NISLKK324 pKa = 10.6NWALKK329 pKa = 10.38NATFVTLYY337 pKa = 10.65EE338 pKa = 4.32PLFSSANQNPTPHH351 pKa = 7.09SEE353 pKa = 4.11DD354 pKa = 3.12

Molecular weight: 40.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E1U822|E1U822_9GEMI Replication enhancer OS=Tomato leaf curl Oman virus OX=713949 PE=3 SV=1
MM1 pKa = 7.7SKK3 pKa = 10.44RR4 pKa = 11.84PGDD7 pKa = 3.95IIISTPVSKK16 pKa = 10.56VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.07SPYY27 pKa = 10.0SSRR30 pKa = 11.84AAVPIVQGTNKK41 pKa = 9.27RR42 pKa = 11.84RR43 pKa = 11.84SWTYY47 pKa = 9.3RR48 pKa = 11.84PMYY51 pKa = 9.36RR52 pKa = 11.84KK53 pKa = 9.08PRR55 pKa = 11.84IYY57 pKa = 10.75RR58 pKa = 11.84MYY60 pKa = 10.32RR61 pKa = 11.84SPDD64 pKa = 3.21VPRR67 pKa = 11.84GCEE70 pKa = 4.34GPCKK74 pKa = 9.32VQSYY78 pKa = 6.99EE79 pKa = 3.67QRR81 pKa = 11.84DD82 pKa = 4.05DD83 pKa = 3.72VKK85 pKa = 9.5HH86 pKa = 5.48TGIVRR91 pKa = 11.84CVSDD95 pKa = 3.31VTRR98 pKa = 11.84GSGITHH104 pKa = 6.35RR105 pKa = 11.84VGKK108 pKa = 9.5RR109 pKa = 11.84FCVKK113 pKa = 10.37SIYY116 pKa = 10.32FLGKK120 pKa = 9.15VWMDD124 pKa = 3.41EE125 pKa = 4.15NIKK128 pKa = 10.04KK129 pKa = 9.97QNHH132 pKa = 4.95TNQVMFFLVRR142 pKa = 11.84DD143 pKa = 3.7RR144 pKa = 11.84RR145 pKa = 11.84PYY147 pKa = 10.66GSSPMDD153 pKa = 3.83FGQVFNMFDD162 pKa = 3.99NEE164 pKa = 4.11PSTATVKK171 pKa = 10.85NDD173 pKa = 2.82LRR175 pKa = 11.84DD176 pKa = 3.36RR177 pKa = 11.84FQVMRR182 pKa = 11.84KK183 pKa = 7.65FHH185 pKa = 6.03ATVIGGPSGMKK196 pKa = 9.5EE197 pKa = 3.54QALVKK202 pKa = 10.31RR203 pKa = 11.84FFRR206 pKa = 11.84INSHH210 pKa = 3.89VTYY213 pKa = 10.54NHH215 pKa = 5.79QEE217 pKa = 3.49AAKK220 pKa = 10.4YY221 pKa = 9.25EE222 pKa = 4.13NHH224 pKa = 6.46TEE226 pKa = 3.99NALLLYY232 pKa = 7.29MACTHH237 pKa = 7.07ASNPVYY243 pKa = 10.08ATMKK247 pKa = 9.61IRR249 pKa = 11.84IYY251 pKa = 10.55FYY253 pKa = 11.2DD254 pKa = 4.06SISNN258 pKa = 3.66

Molecular weight: 30.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1082

85

354

180.3

20.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.529 ± 0.744

2.218 ± 0.389

5.083 ± 0.348

4.621 ± 0.548

4.713 ± 0.51

4.344 ± 0.427

4.159 ± 0.785

6.839 ± 0.828

5.73 ± 0.644

6.007 ± 0.875

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.773 ± 0.619

5.545 ± 0.7

6.47 ± 0.804

5.176 ± 0.631

7.024 ± 1.181

9.242 ± 1.402

4.991 ± 0.734

5.453 ± 1.059

1.294 ± 0.26

3.789 ± 0.51
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski