Dickeya phage Ninurta

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ningirsuvirus; Dickeya virus Ninurta

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 46 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S1GTF1|A0A2S1GTF1_9CAUD DNA-directed DNA polymerase OS=Dickeya phage Ninurta OX=2163631 PE=3 SV=1
MM1 pKa = 7.79RR2 pKa = 11.84SYY4 pKa = 9.3EE5 pKa = 4.31TTLEE9 pKa = 4.07TSEE12 pKa = 4.12EE13 pKa = 4.23LEE15 pKa = 4.29GVNEE19 pKa = 4.02VLASIGEE26 pKa = 4.37PPVSTLEE33 pKa = 3.98GDD35 pKa = 3.8ANADD39 pKa = 3.18VANARR44 pKa = 11.84RR45 pKa = 11.84ILNTVNRR52 pKa = 11.84QIQSKK57 pKa = 8.47GWTYY61 pKa = 10.96NIEE64 pKa = 4.16EE65 pKa = 5.0LDD67 pKa = 3.83LVPDD71 pKa = 4.27VFSKK75 pKa = 10.76LIPYY79 pKa = 8.98MSDD82 pKa = 2.97YY83 pKa = 11.22LRR85 pKa = 11.84VFNDD89 pKa = 3.18SGATQYY95 pKa = 11.07INRR98 pKa = 11.84GGYY101 pKa = 10.54LYY103 pKa = 9.22DD104 pKa = 3.61TTNKK108 pKa = 9.03TDD110 pKa = 3.08QFTSSVTVSIIRR122 pKa = 11.84LKK124 pKa = 10.56EE125 pKa = 3.8FNEE128 pKa = 3.91MPEE131 pKa = 4.26CFRR134 pKa = 11.84SYY136 pKa = 10.67IIAKK140 pKa = 10.26ASRR143 pKa = 11.84QFNMQFFGATEE154 pKa = 3.7IDD156 pKa = 3.34AFLQEE161 pKa = 5.1RR162 pKa = 11.84EE163 pKa = 4.29LEE165 pKa = 4.22CWRR168 pKa = 11.84DD169 pKa = 3.48VQTYY173 pKa = 9.61EE174 pKa = 4.93LDD176 pKa = 3.51YY177 pKa = 11.61GNFNMLDD184 pKa = 3.4GDD186 pKa = 4.36SFVGGLLSRR195 pKa = 4.64

Molecular weight: 22.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S1GTA5|A0A2S1GTA5_9CAUD dGTP triphosphohydrolase inhibitor OS=Dickeya phage Ninurta OX=2163631 PE=4 SV=1
MM1 pKa = 7.74AKK3 pKa = 9.32PHH5 pKa = 5.99NFRR8 pKa = 11.84VVHH11 pKa = 6.53RR12 pKa = 11.84YY13 pKa = 9.18GVTTTPRR20 pKa = 11.84VIQDD24 pKa = 3.67LNTGRR29 pKa = 11.84LHH31 pKa = 6.95PLKK34 pKa = 10.48QQTPHH39 pKa = 6.31IAKK42 pKa = 10.39AGGLTFHH49 pKa = 7.29ILKK52 pKa = 10.4AHH54 pKa = 6.66TGTSNHH60 pKa = 5.3VVVKK64 pKa = 9.51PYY66 pKa = 10.34EE67 pKa = 4.54GNWPRR72 pKa = 11.84LSYY75 pKa = 9.74YY76 pKa = 9.79VKK78 pKa = 10.61RR79 pKa = 11.84GLEE82 pKa = 3.93LFAA85 pKa = 6.87

Molecular weight: 9.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

46

0

46

12044

43

1295

261.8

29.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.158 ± 0.483

0.805 ± 0.141

6.501 ± 0.272

6.551 ± 0.299

3.736 ± 0.23

7.564 ± 0.257

1.876 ± 0.199

5.007 ± 0.19

6.543 ± 0.322

7.888 ± 0.303

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.856 ± 0.166

4.758 ± 0.274

3.496 ± 0.215

4.401 ± 0.436

5.289 ± 0.2

5.961 ± 0.277

5.903 ± 0.268

6.908 ± 0.315

1.453 ± 0.177

3.346 ± 0.178
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski