Capybara microvirus Cap3_SP_457

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8N8|A0A4P8W8N8_9VIRU Nonstructural protein OS=Capybara microvirus Cap3_SP_457 OX=2585461 PE=4 SV=1
MM1 pKa = 7.47IKK3 pKa = 10.12NRR5 pKa = 11.84SAKK8 pKa = 10.29DD9 pKa = 3.51FPTNAGNAIKK19 pKa = 10.31DD20 pKa = 3.52VYY22 pKa = 10.68RR23 pKa = 11.84PIVQPDD29 pKa = 3.36GSIILEE35 pKa = 4.29AYY37 pKa = 9.56EE38 pKa = 5.32KK39 pKa = 10.28IDD41 pKa = 3.62LQAEE45 pKa = 4.2IDD47 pKa = 3.93SHH49 pKa = 8.9FDD51 pKa = 3.32EE52 pKa = 7.08CDD54 pKa = 2.57MTAIVNRR61 pKa = 11.84LMQGDD66 pKa = 4.05LSDD69 pKa = 4.17FQRR72 pKa = 11.84SNPLYY77 pKa = 9.06MDD79 pKa = 3.13STVFPKK85 pKa = 10.23TYY87 pKa = 11.14AEE89 pKa = 3.99MLQLQIDD96 pKa = 3.84VDD98 pKa = 3.99QYY100 pKa = 10.83FASLPTEE107 pKa = 3.97VKK109 pKa = 8.78EE110 pKa = 4.21TYY112 pKa = 10.44GYY114 pKa = 11.01DD115 pKa = 3.32RR116 pKa = 11.84NKK118 pKa = 9.82FFAAIGSDD126 pKa = 2.95EE127 pKa = 4.06WFKK130 pKa = 11.62VLGISNPAAAAVTSEE145 pKa = 4.39EE146 pKa = 4.53GVSEE150 pKa = 4.15

Molecular weight: 16.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W676|A0A4P8W676_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_457 OX=2585461 PE=4 SV=1
MM1 pKa = 7.68RR2 pKa = 11.84CIKK5 pKa = 10.71LMLNTMVVRR14 pKa = 11.84FRR16 pKa = 11.84CSIDD20 pKa = 3.94DD21 pKa = 3.66YY22 pKa = 11.56DD23 pKa = 3.58ILRR26 pKa = 11.84RR27 pKa = 11.84EE28 pKa = 3.8AAKK31 pKa = 10.75RR32 pKa = 11.84NMNMSEE38 pKa = 4.22LFRR41 pKa = 11.84FLIRR45 pKa = 11.84RR46 pKa = 11.84EE47 pKa = 4.06ALSDD51 pKa = 3.35DD52 pKa = 3.84CNIIEE57 pKa = 4.24EE58 pKa = 4.34VQIKK62 pKa = 10.34DD63 pKa = 3.32CSNYY67 pKa = 10.34DD68 pKa = 3.34VRR70 pKa = 11.84CC71 pKa = 3.61

Molecular weight: 8.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1539

71

559

219.9

24.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.992 ± 1.99

1.624 ± 0.575

7.147 ± 0.461

4.418 ± 0.89

5.003 ± 0.468

5.913 ± 0.887

2.404 ± 0.678

4.418 ± 0.817

4.808 ± 1.066

8.902 ± 0.957

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.534 ± 0.539

4.094 ± 0.938

4.808 ± 0.669

4.224 ± 0.321

4.613 ± 0.793

9.747 ± 1.429

4.353 ± 0.462

6.303 ± 0.215

1.235 ± 0.272

5.458 ± 0.357
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski