Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_457

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
11.704AlaAla: 11.704 ± 6.117
0.65AlaCys: 0.65 ± 0.582
6.502AlaAsp: 6.502 ± 3.637
3.901AlaGlu: 3.901 ± 1.837
3.251AlaPhe: 3.251 ± 2.0
5.852AlaGly: 5.852 ± 1.607
0.65AlaHis: 0.65 ± 0.482
3.901AlaIle: 3.901 ± 2.589
4.551AlaLys: 4.551 ± 1.486
5.852AlaLeu: 5.852 ± 1.791
1.951AlaMet: 1.951 ± 1.975
3.901AlaAsn: 3.901 ± 1.966
1.951AlaPro: 1.951 ± 0.983
1.951AlaGln: 1.951 ± 1.327
3.901AlaArg: 3.901 ± 1.176
3.251AlaSer: 3.251 ± 1.319
3.901AlaThr: 3.901 ± 2.451
5.852AlaVal: 5.852 ± 2.699
1.3AlaTrp: 1.3 ± 0.695
4.551AlaTyr: 4.551 ± 1.27
0.0AlaXaa: 0.0 ± 0.0
Cys
1.3CysAla: 1.3 ± 1.164
0.0CysCys: 0.0 ± 0.0
0.65CysAsp: 0.65 ± 0.913
1.3CysGlu: 1.3 ± 1.164
0.65CysPhe: 0.65 ± 0.582
1.3CysGly: 1.3 ± 0.558
0.0CysHis: 0.0 ± 0.0
1.3CysIle: 1.3 ± 1.125
0.0CysLys: 0.0 ± 0.0
1.3CysLeu: 1.3 ± 0.558
1.3CysMet: 1.3 ± 1.349
0.65CysAsn: 0.65 ± 1.04
0.65CysPro: 0.65 ± 0.482
0.65CysGln: 0.65 ± 0.582
1.3CysArg: 1.3 ± 1.07
1.3CysSer: 1.3 ± 2.08
0.65CysThr: 0.65 ± 0.482
1.3CysVal: 1.3 ± 1.164
0.65CysTrp: 0.65 ± 0.482
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.202AspAla: 5.202 ± 2.614
1.951AspCys: 1.951 ± 2.087
3.901AspAsp: 3.901 ± 1.912
3.251AspGlu: 3.251 ± 1.789
6.502AspPhe: 6.502 ± 1.774
1.3AspGly: 1.3 ± 1.018
3.901AspHis: 3.901 ± 1.675
3.901AspIle: 3.901 ± 1.99
1.3AspLys: 1.3 ± 1.363
7.802AspLeu: 7.802 ± 2.449
0.65AspMet: 0.65 ± 0.913
1.3AspAsn: 1.3 ± 0.963
4.551AspPro: 4.551 ± 1.351
3.251AspGln: 3.251 ± 1.074
3.251AspArg: 3.251 ± 1.011
4.551AspSer: 4.551 ± 1.777
1.951AspThr: 1.951 ± 0.983
6.502AspVal: 6.502 ± 1.906
1.3AspTrp: 1.3 ± 0.963
5.202AspTyr: 5.202 ± 1.459
0.0AspXaa: 0.0 ± 0.0
Glu
4.551GluAla: 4.551 ± 2.182
1.3GluCys: 1.3 ± 0.859
1.951GluAsp: 1.951 ± 1.481
1.3GluGlu: 1.3 ± 1.555
1.951GluPhe: 1.951 ± 1.034
1.3GluGly: 1.3 ± 0.859
1.3GluHis: 1.3 ± 0.558
0.65GluIle: 0.65 ± 0.913
0.65GluLys: 0.65 ± 0.913
5.852GluLeu: 5.852 ± 2.877
1.951GluMet: 1.951 ± 1.568
1.3GluAsn: 1.3 ± 0.988
0.65GluPro: 0.65 ± 0.582
2.601GluGln: 2.601 ± 1.403
0.65GluArg: 0.65 ± 0.482
3.901GluSer: 3.901 ± 1.228
1.951GluThr: 1.951 ± 1.047
5.202GluVal: 5.202 ± 1.818
0.65GluTrp: 0.65 ± 0.913
4.551GluTyr: 4.551 ± 1.972
0.0GluXaa: 0.0 ± 0.0
Phe
6.502PheAla: 6.502 ± 2.211
1.3PheCys: 1.3 ± 0.558
3.251PheAsp: 3.251 ± 1.074
0.0PheGlu: 0.0 ± 0.0
3.251PhePhe: 3.251 ± 1.257
1.951PheGly: 1.951 ± 0.865
0.65PheHis: 0.65 ± 0.582
0.0PheIle: 0.0 ± 0.0
1.951PheLys: 1.951 ± 0.825
5.202PheLeu: 5.202 ± 2.877
1.951PheMet: 1.951 ± 1.354
1.3PheAsn: 1.3 ± 0.558
3.901PhePro: 3.901 ± 2.025
1.951PheGln: 1.951 ± 1.331
3.901PheArg: 3.901 ± 2.192
3.251PheSer: 3.251 ± 1.122
2.601PheThr: 2.601 ± 1.927
3.251PheVal: 3.251 ± 0.864
0.65PheTrp: 0.65 ± 0.482
3.251PheTyr: 3.251 ± 0.923
0.0PheXaa: 0.0 ± 0.0
Gly
5.202GlyAla: 5.202 ± 3.365
1.3GlyCys: 1.3 ± 0.558
5.852GlyAsp: 5.852 ± 0.963
3.901GlyGlu: 3.901 ± 1.731
3.251GlyPhe: 3.251 ± 1.122
3.251GlyGly: 3.251 ± 1.122
0.0GlyHis: 0.0 ± 0.0
3.251GlyIle: 3.251 ± 1.168
0.65GlyLys: 0.65 ± 0.582
6.502GlyLeu: 6.502 ± 2.014
1.951GlyMet: 1.951 ± 1.29
2.601GlyAsn: 2.601 ± 0.979
0.65GlyPro: 0.65 ± 0.482
0.65GlyGln: 0.65 ± 0.482
1.3GlyArg: 1.3 ± 0.558
8.453GlySer: 8.453 ± 2.006
2.601GlyThr: 2.601 ± 0.755
3.251GlyVal: 3.251 ± 1.319
0.65GlyTrp: 0.65 ± 0.582
3.901GlyTyr: 3.901 ± 1.42
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
1.3HisAsp: 1.3 ± 0.558
0.0HisGlu: 0.0 ± 0.0
1.3HisPhe: 1.3 ± 0.859
3.251HisGly: 3.251 ± 1.557
0.65HisHis: 0.65 ± 0.482
0.65HisIle: 0.65 ± 0.582
0.65HisLys: 0.65 ± 0.881
2.601HisLeu: 2.601 ± 1.117
1.3HisMet: 1.3 ± 0.561
0.65HisAsn: 0.65 ± 0.482
2.601HisPro: 2.601 ± 2.141
0.65HisGln: 0.65 ± 0.582
0.65HisArg: 0.65 ± 0.482
1.3HisSer: 1.3 ± 0.963
1.951HisThr: 1.951 ± 0.865
1.3HisVal: 1.3 ± 1.071
1.3HisTrp: 1.3 ± 0.558
1.951HisTyr: 1.951 ± 0.588
0.0HisXaa: 0.0 ± 0.0
Ile
1.3IleAla: 1.3 ± 1.071
0.65IleCys: 0.65 ± 0.582
3.251IleAsp: 3.251 ± 3.003
1.3IleGlu: 1.3 ± 1.125
3.251IlePhe: 3.251 ± 1.854
3.251IleGly: 3.251 ± 1.613
1.3IleHis: 1.3 ± 0.558
1.3IleIle: 1.3 ± 1.555
3.251IleLys: 3.251 ± 3.324
5.852IleLeu: 5.852 ± 1.31
1.3IleMet: 1.3 ± 0.963
0.65IleAsn: 0.65 ± 0.881
2.601IlePro: 2.601 ± 1.927
1.3IleGln: 1.3 ± 0.695
1.3IleArg: 1.3 ± 0.995
2.601IleSer: 2.601 ± 0.889
1.951IleThr: 1.951 ± 1.034
3.251IleVal: 3.251 ± 2.481
1.3IleTrp: 1.3 ± 0.558
3.251IleTyr: 3.251 ± 1.165
0.0IleXaa: 0.0 ± 0.0
Lys
2.601LysAla: 2.601 ± 1.39
0.65LysCys: 0.65 ± 0.582
2.601LysAsp: 2.601 ± 2.309
4.551LysGlu: 4.551 ± 1.536
3.901LysPhe: 3.901 ± 1.405
1.951LysGly: 1.951 ± 1.292
0.65LysHis: 0.65 ± 0.582
1.951LysIle: 1.951 ± 1.384
4.551LysLys: 4.551 ± 3.079
4.551LysLeu: 4.551 ± 2.551
1.951LysMet: 1.951 ± 1.148
1.3LysAsn: 1.3 ± 1.054
0.65LysPro: 0.65 ± 0.582
1.951LysGln: 1.951 ± 1.676
1.3LysArg: 1.3 ± 0.995
4.551LysSer: 4.551 ± 1.432
3.251LysThr: 3.251 ± 1.495
2.601LysVal: 2.601 ± 1.141
0.65LysTrp: 0.65 ± 0.482
1.951LysTyr: 1.951 ± 0.588
0.0LysXaa: 0.0 ± 0.0
Leu
5.852LeuAla: 5.852 ± 1.582
1.3LeuCys: 1.3 ± 1.07
1.951LeuAsp: 1.951 ± 0.925
4.551LeuGlu: 4.551 ± 1.524
5.202LeuPhe: 5.202 ± 2.352
8.453LeuGly: 8.453 ± 1.649
1.3LeuHis: 1.3 ± 1.164
3.251LeuIle: 3.251 ± 1.267
6.502LeuLys: 6.502 ± 2.9
2.601LeuLeu: 2.601 ± 1.98
1.951LeuMet: 1.951 ± 1.414
6.502LeuAsn: 6.502 ± 1.773
7.152LeuPro: 7.152 ± 1.884
3.251LeuGln: 3.251 ± 2.542
5.852LeuArg: 5.852 ± 2.451
11.053LeuSer: 11.053 ± 3.001
3.901LeuThr: 3.901 ± 1.346
3.251LeuVal: 3.251 ± 1.249
0.65LeuTrp: 0.65 ± 1.011
4.551LeuTyr: 4.551 ± 1.452
0.0LeuXaa: 0.0 ± 0.0
Met
1.951MetAla: 1.951 ± 2.044
0.0MetCys: 0.0 ± 0.0
1.3MetAsp: 1.3 ± 1.054
0.65MetGlu: 0.65 ± 1.011
0.0MetPhe: 0.0 ± 0.0
0.65MetGly: 0.65 ± 0.482
0.65MetHis: 0.65 ± 1.011
1.951MetIle: 1.951 ± 1.384
1.3MetLys: 1.3 ± 0.988
1.951MetLeu: 1.951 ± 1.57
0.65MetMet: 0.65 ± 1.011
2.601MetAsn: 2.601 ± 1.378
1.3MetPro: 1.3 ± 0.963
1.3MetGln: 1.3 ± 1.018
1.3MetArg: 1.3 ± 0.995
3.901MetSer: 3.901 ± 1.99
1.3MetThr: 1.3 ± 0.859
1.951MetVal: 1.951 ± 1.06
0.0MetTrp: 0.0 ± 0.0
0.65MetTyr: 0.65 ± 0.482
0.0MetXaa: 0.0 ± 0.0
Asn
2.601AsnAla: 2.601 ± 1.67
0.0AsnCys: 0.0 ± 0.0
2.601AsnAsp: 2.601 ± 1.055
1.3AsnGlu: 1.3 ± 1.07
0.0AsnPhe: 0.0 ± 0.0
0.65AsnGly: 0.65 ± 0.681
0.0AsnHis: 0.0 ± 0.0
1.3AsnIle: 1.3 ± 0.995
1.3AsnLys: 1.3 ± 1.018
3.901AsnLeu: 3.901 ± 1.716
1.3AsnMet: 1.3 ± 2.08
1.951AsnAsn: 1.951 ± 1.181
4.551AsnPro: 4.551 ± 1.642
3.901AsnGln: 3.901 ± 2.89
3.901AsnArg: 3.901 ± 2.104
3.901AsnSer: 3.901 ± 1.688
1.3AsnThr: 1.3 ± 1.195
5.202AsnVal: 5.202 ± 2.39
0.0AsnTrp: 0.0 ± 0.0
1.3AsnTyr: 1.3 ± 1.195
0.0AsnXaa: 0.0 ± 0.0
Pro
3.251ProAla: 3.251 ± 1.168
1.3ProCys: 1.3 ± 1.07
3.251ProAsp: 3.251 ± 1.074
1.951ProGlu: 1.951 ± 0.865
1.951ProPhe: 1.951 ± 0.865
6.502ProGly: 6.502 ± 2.387
0.65ProHis: 0.65 ± 0.582
3.901ProIle: 3.901 ± 1.127
2.601ProLys: 2.601 ± 1.068
3.901ProLeu: 3.901 ± 1.55
1.3ProMet: 1.3 ± 0.963
0.65ProAsn: 0.65 ± 0.482
0.65ProPro: 0.65 ± 0.582
3.251ProGln: 3.251 ± 1.737
0.65ProArg: 0.65 ± 0.582
4.551ProSer: 4.551 ± 2.277
4.551ProThr: 4.551 ± 1.633
1.951ProVal: 1.951 ± 1.29
0.65ProTrp: 0.65 ± 1.011
0.65ProTyr: 0.65 ± 0.681
0.0ProXaa: 0.0 ± 0.0
Gln
3.901GlnAla: 3.901 ± 0.995
1.3GlnCys: 1.3 ± 0.963
2.601GlnAsp: 2.601 ± 1.33
2.601GlnGlu: 2.601 ± 1.144
1.951GlnPhe: 1.951 ± 1.177
1.3GlnGly: 1.3 ± 0.859
0.65GlnHis: 0.65 ± 0.681
2.601GlnIle: 2.601 ± 1.337
1.3GlnLys: 1.3 ± 0.558
3.251GlnLeu: 3.251 ± 1.143
1.3GlnMet: 1.3 ± 0.695
0.0GlnAsn: 0.0 ± 0.0
1.3GlnPro: 1.3 ± 0.859
1.3GlnGln: 1.3 ± 0.766
5.202GlnArg: 5.202 ± 0.755
2.601GlnSer: 2.601 ± 1.117
3.251GlnThr: 3.251 ± 1.557
3.251GlnVal: 3.251 ± 1.854
0.0GlnTrp: 0.0 ± 0.0
2.601GlnTyr: 2.601 ± 1.141
0.0GlnXaa: 0.0 ± 0.0
Arg
1.3ArgAla: 1.3 ± 0.963
3.251ArgCys: 3.251 ± 3.187
1.3ArgAsp: 1.3 ± 0.558
3.901ArgGlu: 3.901 ± 2.777
2.601ArgPhe: 2.601 ± 1.918
1.951ArgGly: 1.951 ± 0.865
1.3ArgHis: 1.3 ± 0.558
1.3ArgIle: 1.3 ± 0.988
0.65ArgLys: 0.65 ± 0.482
4.551ArgLeu: 4.551 ± 1.077
0.65ArgMet: 0.65 ± 0.482
2.601ArgAsn: 2.601 ± 1.677
3.901ArgPro: 3.901 ± 1.212
2.601ArgGln: 2.601 ± 1.531
1.951ArgArg: 1.951 ± 2.087
6.502ArgSer: 6.502 ± 1.523
0.65ArgThr: 0.65 ± 0.681
1.951ArgVal: 1.951 ± 0.865
0.0ArgTrp: 0.0 ± 0.0
3.251ArgTyr: 3.251 ± 1.375
0.0ArgXaa: 0.0 ± 0.0
Ser
7.802SerAla: 7.802 ± 2.858
0.65SerCys: 0.65 ± 0.582
11.053SerAsp: 11.053 ± 2.216
4.551SerGlu: 4.551 ± 2.327
3.901SerPhe: 3.901 ± 1.183
6.502SerGly: 6.502 ± 4.512
4.551SerHis: 4.551 ± 1.077
7.152SerIle: 7.152 ± 2.038
5.852SerLys: 5.852 ± 1.927
8.453SerLeu: 8.453 ± 2.223
0.65SerMet: 0.65 ± 1.011
6.502SerAsn: 6.502 ± 2.737
1.951SerPro: 1.951 ± 0.588
2.601SerGln: 2.601 ± 1.117
1.951SerArg: 1.951 ± 1.034
9.753SerSer: 9.753 ± 6.349
3.251SerThr: 3.251 ± 1.319
5.852SerVal: 5.852 ± 1.582
1.951SerTrp: 1.951 ± 0.925
2.601SerTyr: 2.601 ± 1.689
0.0SerXaa: 0.0 ± 0.0
Thr
5.852ThrAla: 5.852 ± 4.169
0.0ThrCys: 0.0 ± 0.0
3.251ThrAsp: 3.251 ± 1.451
1.951ThrGlu: 1.951 ± 1.052
1.3ThrPhe: 1.3 ± 0.963
3.251ThrGly: 3.251 ± 1.122
0.65ThrHis: 0.65 ± 0.582
0.65ThrIle: 0.65 ± 0.482
2.601ThrLys: 2.601 ± 1.117
3.251ThrLeu: 3.251 ± 1.557
0.65ThrMet: 0.65 ± 1.04
0.65ThrAsn: 0.65 ± 0.913
1.951ThrPro: 1.951 ± 0.983
1.951ThrGln: 1.951 ± 0.983
1.3ThrArg: 1.3 ± 0.988
5.202ThrSer: 5.202 ± 1.846
1.3ThrThr: 1.3 ± 0.963
2.601ThrVal: 2.601 ± 0.889
0.0ThrTrp: 0.0 ± 0.0
5.202ThrTyr: 5.202 ± 2.034
0.0ThrXaa: 0.0 ± 0.0
Val
4.551ValAla: 4.551 ± 1.22
0.0ValCys: 0.0 ± 0.0
5.852ValAsp: 5.852 ± 0.963
1.3ValGlu: 1.3 ± 0.558
1.3ValPhe: 1.3 ± 1.018
2.601ValGly: 2.601 ± 1.383
2.601ValHis: 2.601 ± 1.33
1.951ValIle: 1.951 ± 1.181
5.202ValLys: 5.202 ± 1.967
6.502ValLeu: 6.502 ± 0.83
1.3ValMet: 1.3 ± 1.363
2.601ValAsn: 2.601 ± 0.979
4.551ValPro: 4.551 ± 1.544
4.551ValGln: 4.551 ± 1.039
2.601ValArg: 2.601 ± 2.42
7.802ValSer: 7.802 ± 2.137
1.3ValThr: 1.3 ± 0.859
3.901ValVal: 3.901 ± 1.216
0.0ValTrp: 0.0 ± 0.0
2.601ValTyr: 2.601 ± 1.452
0.0ValXaa: 0.0 ± 0.0
Trp
0.65TrpAla: 0.65 ± 0.582
0.0TrpCys: 0.0 ± 0.0
1.3TrpAsp: 1.3 ± 0.963
0.65TrpGlu: 0.65 ± 0.582
1.3TrpPhe: 1.3 ± 0.859
0.0TrpGly: 0.0 ± 0.0
0.65TrpHis: 0.65 ± 0.482
0.0TrpIle: 0.0 ± 0.0
0.65TrpLys: 0.65 ± 0.482
1.951TrpLeu: 1.951 ± 1.181
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.65TrpGln: 0.65 ± 0.582
0.65TrpArg: 0.65 ± 1.011
1.951TrpSer: 1.951 ± 0.865
1.3TrpThr: 1.3 ± 0.695
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.65TrpTyr: 0.65 ± 0.881
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.901TyrAla: 3.901 ± 1.456
0.65TyrCys: 0.65 ± 0.582
7.802TyrAsp: 7.802 ± 2.086
1.3TyrGlu: 1.3 ± 1.018
3.251TyrPhe: 3.251 ± 1.074
3.901TyrGly: 3.901 ± 1.735
1.951TyrHis: 1.951 ± 0.865
3.251TyrIle: 3.251 ± 1.165
2.601TyrLys: 2.601 ± 0.941
3.251TyrLeu: 3.251 ± 1.292
0.65TyrMet: 0.65 ± 0.913
3.251TyrAsn: 3.251 ± 1.34
2.601TyrPro: 2.601 ± 0.755
1.951TyrGln: 1.951 ± 0.588
3.251TyrArg: 3.251 ± 1.074
7.152TyrSer: 7.152 ± 2.755
0.65TyrThr: 0.65 ± 0.482
0.65TyrVal: 0.65 ± 0.582
0.65TyrTrp: 0.65 ± 0.482
1.951TyrTyr: 1.951 ± 0.983
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1539 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski