Plasmodium yoelii yoelii

Taxonomy: cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Vinckeia); Plasmodium yoelii

Average proteome isoelectric point is 7.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7741 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q7RHP3|Q7RHP3_PLAYO GAF domain protein OS=Plasmodium yoelii yoelii OX=73239 GN=PY03941 PE=4 SV=1
MM1 pKa = 8.31DD2 pKa = 4.66DD3 pKa = 3.95TEE5 pKa = 5.24GLAPGNMNDD14 pKa = 4.75AEE16 pKa = 4.66GLAPDD21 pKa = 4.95NMDD24 pKa = 3.8DD25 pKa = 4.35TEE27 pKa = 4.89GLAPGNMDD35 pKa = 3.25DD36 pKa = 4.65TEE38 pKa = 4.62HH39 pKa = 5.4NHH41 pKa = 4.09YY42 pKa = 10.22RR43 pKa = 11.84YY44 pKa = 10.74YY45 pKa = 10.27IDD47 pKa = 4.13IRR49 pKa = 11.84LIHH52 pKa = 5.89YY53 pKa = 8.55

Molecular weight: 6.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q7RAX0|Q7RAX0_PLAYO N-acetylglucosaminylphosphatidylinositol deacetylase (Fragment) OS=Plasmodium yoelii yoelii OX=73239 GN=PY06379 PE=3 SV=1
SS1 pKa = 6.69SRR3 pKa = 11.84FIPRR7 pKa = 11.84FTRR10 pKa = 11.84RR11 pKa = 11.84IKK13 pKa = 10.6KK14 pKa = 10.15NKK16 pKa = 9.12

Molecular weight: 2.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7741

0

7741

3378133

8

6636

436.4

51.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.514 ± 0.025

1.745 ± 0.013

5.929 ± 0.023

7.104 ± 0.04

4.785 ± 0.027

3.375 ± 0.027

1.93 ± 0.009

9.646 ± 0.031

11.509 ± 0.04

7.873 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.909 ± 0.01

12.799 ± 0.072

2.276 ± 0.021

2.797 ± 0.029

2.655 ± 0.021

7.201 ± 0.026

4.298 ± 0.017

3.717 ± 0.021

0.521 ± 0.007

5.366 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski