Pseudooceanicola lipolyticus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudooceanicola

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5156 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2M8IVR8|A0A2M8IVR8_9RHOB Corrinoid adenosyltransferase OS=Pseudooceanicola lipolyticus OX=2029104 GN=cobO PE=3 SV=1
MM1 pKa = 7.84KK2 pKa = 10.34YY3 pKa = 8.85LTFAAGVFGASAALAQTPEE22 pKa = 4.31LTVYY26 pKa = 10.09TYY28 pKa = 11.48DD29 pKa = 3.62SFVAEE34 pKa = 5.0WGPGPQIEE42 pKa = 4.53TAFEE46 pKa = 4.05AVCNCDD52 pKa = 3.27LTLVAAGDD60 pKa = 4.04GAALLARR67 pKa = 11.84LQLEE71 pKa = 4.35GDD73 pKa = 3.32RR74 pKa = 11.84TEE76 pKa = 4.96ADD78 pKa = 3.47VVLGLDD84 pKa = 3.72TNLVPAARR92 pKa = 11.84EE93 pKa = 3.87TGLFAPHH100 pKa = 6.6GADD103 pKa = 3.09ATLDD107 pKa = 4.42LPITWDD113 pKa = 3.99DD114 pKa = 3.91DD115 pKa = 3.86TFLPYY120 pKa = 10.65DD121 pKa = 3.12WGYY124 pKa = 10.36FAFIHH129 pKa = 5.55NTDD132 pKa = 4.14LANVPQDD139 pKa = 3.86FLEE142 pKa = 4.53LAASDD147 pKa = 4.19LSILIQDD154 pKa = 4.48PRR156 pKa = 11.84SSTPGLGLLMWVKK169 pKa = 10.34AAYY172 pKa = 9.95GDD174 pKa = 3.66EE175 pKa = 4.63APAVWAALADD185 pKa = 4.22NIVTVTKK192 pKa = 10.12GWSEE196 pKa = 4.19AYY198 pKa = 10.37GLFLDD203 pKa = 5.47GEE205 pKa = 4.66ADD207 pKa = 3.4MVLSYY212 pKa = 7.66TTSPAYY218 pKa = 10.17HH219 pKa = 7.21IIAEE223 pKa = 4.6DD224 pKa = 3.82DD225 pKa = 3.63TSKK228 pKa = 11.22DD229 pKa = 2.86AAAFDD234 pKa = 4.04EE235 pKa = 4.31GHH237 pKa = 6.05YY238 pKa = 10.6LQIEE242 pKa = 4.46LAAPLAGSDD251 pKa = 3.84QPEE254 pKa = 4.04LAAQFMQFITTDD266 pKa = 3.28AFQSVIPTTNWMYY279 pKa = 9.9PAVMPADD286 pKa = 4.04GLPAEE291 pKa = 4.94FDD293 pKa = 3.65TLVEE297 pKa = 4.17PRR299 pKa = 11.84NALLIPEE306 pKa = 4.58AEE308 pKa = 4.32VTEE311 pKa = 4.53LRR313 pKa = 11.84AQALAEE319 pKa = 3.99WLDD322 pKa = 3.67ALSQQ326 pKa = 3.47

Molecular weight: 35.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2M8IYF9|A0A2M8IYF9_9RHOB sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC OS=Pseudooceanicola lipolyticus OX=2029104 GN=CVM52_16705 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.43EE41 pKa = 3.72LSAA44 pKa = 5.03

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5156

0

5156

1548121

22

3102

300.3

32.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.644 ± 0.042

0.905 ± 0.011

5.991 ± 0.034

5.851 ± 0.035

3.736 ± 0.022

8.798 ± 0.037

2.016 ± 0.016

5.058 ± 0.022

2.83 ± 0.025

10.295 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.679 ± 0.018

2.482 ± 0.018

5.191 ± 0.025

3.294 ± 0.02

7.003 ± 0.035

5.088 ± 0.022

5.356 ± 0.026

7.193 ± 0.026

1.35 ± 0.013

2.24 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski