Plasmodium falciparum RAJ116

Taxonomy: cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3177 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0L0D0G9|A0A0L0D0G9_PLAFA Uncharacterized protein OS=Plasmodium falciparum RAJ116 OX=580058 GN=PFLG_02945 PE=4 SV=1
MM1 pKa = 7.56SYY3 pKa = 10.52VGPYY7 pKa = 9.72CEE9 pKa = 4.43CKK11 pKa = 10.55CNIGHH16 pKa = 6.99KK17 pKa = 10.41VGSSWYY23 pKa = 10.54NNDD26 pKa = 5.38DD27 pKa = 3.36INDD30 pKa = 3.94VIKK33 pKa = 10.95HH34 pKa = 5.36EE35 pKa = 4.84FGSSEE40 pKa = 4.11YY41 pKa = 11.1NNDD44 pKa = 4.63DD45 pKa = 4.2ISDD48 pKa = 4.11DD49 pKa = 3.86SSKK52 pKa = 10.8KK53 pKa = 10.79GLMIDD58 pKa = 4.26MIMQVSATLDD68 pKa = 3.33LDD70 pKa = 4.65LYY72 pKa = 11.27NNDD75 pKa = 5.37DD76 pKa = 4.01ISDD79 pKa = 4.13DD80 pKa = 3.74SSKK83 pKa = 11.27KK84 pKa = 10.61LVINDD89 pKa = 4.27IIVHH93 pKa = 5.25VSAPEE98 pKa = 3.86EE99 pKa = 4.36TEE101 pKa = 3.92LL102 pKa = 5.34

Molecular weight: 11.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0L0CS98|A0A0L0CS98_PLAFA Uncharacterized protein OS=Plasmodium falciparum RAJ116 OX=580058 GN=PFLG_00113 PE=4 SV=1
MM1 pKa = 7.21LVKK4 pKa = 10.29VRR6 pKa = 11.84PVLVKK11 pKa = 10.49LRR13 pKa = 11.84PILVNLRR20 pKa = 11.84PKK22 pKa = 10.24LVNLRR27 pKa = 11.84PVLVKK32 pKa = 10.55LRR34 pKa = 11.84PTLVNLRR41 pKa = 11.84PQLMKK46 pKa = 10.45VRR48 pKa = 11.84SMLVKK53 pKa = 10.36LVKK56 pKa = 10.06LRR58 pKa = 11.84PMLVKK63 pKa = 10.45LGPMLATLRR72 pKa = 11.84PMLVKK77 pKa = 10.62LRR79 pKa = 11.84PKK81 pKa = 9.98LVKK84 pKa = 10.28LRR86 pKa = 11.84PQLMNVRR93 pKa = 11.84PMLVKK98 pKa = 10.33VRR100 pKa = 11.84PKK102 pKa = 10.27LVKK105 pKa = 10.16LRR107 pKa = 11.84AMLVKK112 pKa = 10.11LRR114 pKa = 11.84PMLVEE119 pKa = 3.99VV120 pKa = 4.22

Molecular weight: 13.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3177

0

3177

2165978

40

10229

681.8

80.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

1.954 ± 0.031

1.791 ± 0.024

6.703 ± 0.045

7.326 ± 0.089

4.07 ± 0.035

3.029 ± 0.038

2.446 ± 0.02

8.871 ± 0.055

11.608 ± 0.055

7.196 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.259 ± 0.02

14.623 ± 0.133

2.105 ± 0.027

2.772 ± 0.026

2.669 ± 0.022

6.507 ± 0.04

4.161 ± 0.033

3.877 ± 0.046

0.524 ± 0.013

5.509 ± 0.044
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski