Roseivivax jejudonensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseivivax

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4082 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X6ZXI2|A0A1X6ZXI2_9RHOB Carboxymethylenebutenolidase OS=Roseivivax jejudonensis OX=1529041 GN=clcD_1 PE=4 SV=1
MM1 pKa = 7.35HH2 pKa = 6.87RR3 pKa = 11.84TAALALVTAALAGPALAQDD22 pKa = 3.81ADD24 pKa = 3.92EE25 pKa = 4.83SVSGTLVLYY34 pKa = 9.02TSQPDD39 pKa = 2.99QDD41 pKa = 3.7AQQTVDD47 pKa = 4.3AFNEE51 pKa = 4.28VYY53 pKa = 10.54PDD55 pKa = 3.65VDD57 pKa = 3.98VEE59 pKa = 4.22WVRR62 pKa = 11.84DD63 pKa = 3.59GTTQMMARR71 pKa = 11.84LRR73 pKa = 11.84AEE75 pKa = 4.42FEE77 pKa = 4.19AGQPQPDD84 pKa = 3.71VLLIADD90 pKa = 4.56TVTMEE95 pKa = 3.87SLEE98 pKa = 4.11RR99 pKa = 11.84DD100 pKa = 4.15GRR102 pKa = 11.84LMAYY106 pKa = 9.62PDD108 pKa = 4.55ADD110 pKa = 3.18VSAYY114 pKa = 10.49DD115 pKa = 4.59DD116 pKa = 4.02GLMDD120 pKa = 3.86PEE122 pKa = 5.16GYY124 pKa = 10.53YY125 pKa = 10.8FSTKK129 pKa = 10.53LITTGIVYY137 pKa = 10.59NEE139 pKa = 4.11AAEE142 pKa = 4.21MVPEE146 pKa = 4.72SYY148 pKa = 11.54ADD150 pKa = 3.86LLEE153 pKa = 4.45PAAEE157 pKa = 4.21NNIVMPSPLEE167 pKa = 4.14SGAATIHH174 pKa = 5.55MVSLTGLPDD183 pKa = 4.26LGWDD187 pKa = 3.75YY188 pKa = 11.98YY189 pKa = 11.18EE190 pKa = 4.99GLAEE194 pKa = 4.34QGAIAQGGNGGTYY207 pKa = 9.3QAVAGGQALYY217 pKa = 10.97GFVVDD222 pKa = 7.14FLALRR227 pKa = 11.84NIQDD231 pKa = 3.68GAPVGFVFPEE241 pKa = 4.09EE242 pKa = 4.17GVSAVTEE249 pKa = 3.97PVAILEE255 pKa = 4.3TAQNVEE261 pKa = 3.76AAQAFVDD268 pKa = 4.77FLLSEE273 pKa = 4.22QGQEE277 pKa = 3.43LAARR281 pKa = 11.84QGYY284 pKa = 9.37LPAHH288 pKa = 7.28PDD290 pKa = 3.08VAAPDD295 pKa = 3.95YY296 pKa = 10.86FPDD299 pKa = 3.48RR300 pKa = 11.84SGIEE304 pKa = 4.16VITFDD309 pKa = 4.9PAEE312 pKa = 4.19ALANDD317 pKa = 4.2AEE319 pKa = 4.44NKK321 pKa = 9.7EE322 pKa = 4.23RR323 pKa = 11.84FAEE326 pKa = 4.35TFGGG330 pKa = 3.75

Molecular weight: 35.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1X6YBL8|A0A1X6YBL8_9RHOB Urease accessory protein UreE OS=Roseivivax jejudonensis OX=1529041 GN=ureE1 PE=3 SV=1
MM1 pKa = 7.26IRR3 pKa = 11.84SLVLPLGILAAPAAAHH19 pKa = 6.65PGAHH23 pKa = 6.34PHH25 pKa = 5.98PHH27 pKa = 6.19VATPWLAAALALVAVAALVALRR49 pKa = 11.84QSRR52 pKa = 11.84RR53 pKa = 11.84PRR55 pKa = 3.62

Molecular weight: 5.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4082

0

4082

1278265

29

7162

313.1

33.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.415 ± 0.073

0.838 ± 0.013

6.543 ± 0.057

6.107 ± 0.039

3.553 ± 0.024

9.041 ± 0.052

1.988 ± 0.022

4.686 ± 0.029

2.231 ± 0.031

9.887 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.542 ± 0.022

2.16 ± 0.028

5.32 ± 0.032

2.726 ± 0.02

7.594 ± 0.052

4.882 ± 0.025

5.544 ± 0.04

7.44 ± 0.031

1.408 ± 0.018

2.094 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski