Roseibacterium elongatum DSM 19469

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseibacterium; Roseibacterium elongatum

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3433 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W8RU49|W8RU49_9RHOB Serine acetyltransferase OS=Roseibacterium elongatum DSM 19469 OX=1294273 GN=roselon_02429 PE=3 SV=1
MM1 pKa = 7.4AAAPGTGGGGGGTGTGGTGGTGGGGTGDD29 pKa = 4.08PGTGGGGTGGTGGGGTGGTGGGTGGGTTDD58 pKa = 4.59PDD60 pKa = 3.86PVTPYY65 pKa = 10.26IPTSPVVGCPSTDD78 pKa = 3.64YY79 pKa = 11.17LGEE82 pKa = 4.64AYY84 pKa = 7.07TTTGEE89 pKa = 4.13DD90 pKa = 4.13LEE92 pKa = 5.57DD93 pKa = 3.26EE94 pKa = 4.64TVRR97 pKa = 11.84LDD99 pKa = 3.76ASGGGQTPLDD109 pKa = 4.27SCPGIPGTGYY119 pKa = 10.91VYY121 pKa = 11.07ANPTFSLYY129 pKa = 10.63LSEE132 pKa = 4.56MDD134 pKa = 3.47DD135 pKa = 3.68FEE137 pKa = 5.75RR138 pKa = 11.84FVVRR142 pKa = 11.84IHH144 pKa = 6.93SDD146 pKa = 3.21CDD148 pKa = 3.36TTLLLRR154 pKa = 11.84DD155 pKa = 3.61AQGNYY160 pKa = 10.12HH161 pKa = 6.78FDD163 pKa = 4.42DD164 pKa = 5.72DD165 pKa = 5.58SGPDD169 pKa = 3.23LNGRR173 pKa = 11.84LRR175 pKa = 11.84LRR177 pKa = 11.84DD178 pKa = 3.78MEE180 pKa = 4.54PLNGRR185 pKa = 11.84VDD187 pKa = 3.58IYY189 pKa = 11.56VGTFDD194 pKa = 6.03GDD196 pKa = 3.59TCNDD200 pKa = 3.22VQVRR204 pKa = 11.84LILRR208 pKa = 11.84DD209 pKa = 3.35

Molecular weight: 20.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W8S5X5|W8S5X5_9RHOB Uncharacterized protein OS=Roseibacterium elongatum DSM 19469 OX=1294273 GN=roselon_03379 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLVRR13 pKa = 11.84KK14 pKa = 9.18RR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.42GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.37AGRR29 pKa = 11.84KK30 pKa = 8.54ILNARR35 pKa = 11.84RR36 pKa = 11.84ARR38 pKa = 11.84GRR40 pKa = 11.84KK41 pKa = 9.07SLSAA45 pKa = 3.93

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3433

0

3433

1011806

37

1857

294.7

31.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.112 ± 0.064

0.896 ± 0.014

6.327 ± 0.049

5.753 ± 0.039

3.584 ± 0.03

9.064 ± 0.049

2.113 ± 0.025

4.948 ± 0.031

2.416 ± 0.039

10.07 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.79 ± 0.02

2.223 ± 0.025

5.485 ± 0.037

3.031 ± 0.022

7.291 ± 0.05

4.67 ± 0.029

5.473 ± 0.03

7.209 ± 0.036

1.433 ± 0.017

2.113 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski