Trabulsiella guamensis ATCC 49490

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Trabulsiella; Trabulsiella guamensis

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4729 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A085AAW3|A0A085AAW3_9ENTR Putative beta-D-galactosidase OS=Trabulsiella guamensis ATCC 49490 OX=1005994 GN=yjgK PE=4 SV=1
MM1 pKa = 7.8ANPEE5 pKa = 4.02HH6 pKa = 8.01LEE8 pKa = 3.96EE9 pKa = 4.1QRR11 pKa = 11.84EE12 pKa = 4.15EE13 pKa = 3.72TRR15 pKa = 11.84LIIEE19 pKa = 4.54EE20 pKa = 4.2LLEE23 pKa = 5.25DD24 pKa = 4.98GSDD27 pKa = 3.46PDD29 pKa = 3.46ALYY32 pKa = 9.93TIEE35 pKa = 4.48HH36 pKa = 6.77HH37 pKa = 7.18LSADD41 pKa = 3.68DD42 pKa = 5.18LEE44 pKa = 4.53TLEE47 pKa = 4.44KK48 pKa = 10.7VAVEE52 pKa = 3.97AFKK55 pKa = 10.94LGYY58 pKa = 9.94EE59 pKa = 4.07VTEE62 pKa = 4.14PEE64 pKa = 4.09EE65 pKa = 4.65LEE67 pKa = 4.24VEE69 pKa = 4.21EE70 pKa = 5.36GDD72 pKa = 5.04VVICCDD78 pKa = 3.7ILSEE82 pKa = 4.25CALKK86 pKa = 11.06AEE88 pKa = 5.23LIDD91 pKa = 4.01AQVEE95 pKa = 4.18QLMNLAEE102 pKa = 4.21KK103 pKa = 10.65HH104 pKa = 5.76DD105 pKa = 3.79VEE107 pKa = 4.34YY108 pKa = 11.01DD109 pKa = 3.01GWGTYY114 pKa = 10.13YY115 pKa = 10.61EE116 pKa = 4.99DD117 pKa = 4.22PNGEE121 pKa = 4.32DD122 pKa = 5.23GEE124 pKa = 5.91DD125 pKa = 3.61DD126 pKa = 4.39DD127 pKa = 5.78EE128 pKa = 7.23DD129 pKa = 4.85YY130 pKa = 11.75VDD132 pKa = 4.7EE133 pKa = 6.13DD134 pKa = 4.55DD135 pKa = 5.94DD136 pKa = 4.65GVRR139 pKa = 11.84HH140 pKa = 6.05

Molecular weight: 15.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A084ZR26|A0A084ZR26_9ENTR D-ribose pyranase OS=Trabulsiella guamensis ATCC 49490 OX=1005994 GN=rbsD PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.16GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LTVSKK46 pKa = 10.99

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4729

0

4729

1449508

19

3707

306.5

33.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.731 ± 0.043

1.039 ± 0.014

5.383 ± 0.036

5.562 ± 0.045

3.774 ± 0.029

7.58 ± 0.049

2.224 ± 0.019

5.731 ± 0.031

4.14 ± 0.033

10.627 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.725 ± 0.02

3.868 ± 0.034

4.412 ± 0.03

4.406 ± 0.031

5.661 ± 0.043

6.012 ± 0.034

5.704 ± 0.054

7.132 ± 0.03

1.529 ± 0.017

2.758 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski