Fusobacterium naviforme

Taxonomy: cellular organisms; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2187 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P8EJE0|A0A2P8EJE0_9FUSO RNA polymerase primary sigma factor OS=Fusobacterium naviforme OX=77917 GN=EI53_01576 PE=4 SV=1
MM1 pKa = 7.86EE2 pKa = 5.17SRR4 pKa = 11.84LDD6 pKa = 3.62LSQASAEE13 pKa = 4.04LAEE16 pKa = 4.45EE17 pKa = 4.14VRR19 pKa = 11.84GEE21 pKa = 4.24KK22 pKa = 10.62SIDD25 pKa = 3.38LDD27 pKa = 3.88AMVSKK32 pKa = 10.23LIPYY36 pKa = 9.37GLYY39 pKa = 10.17RR40 pKa = 11.84KK41 pKa = 9.7AQVDD45 pKa = 3.61VANIFFEE52 pKa = 4.21DD53 pKa = 3.27ARR55 pKa = 11.84RR56 pKa = 11.84DD57 pKa = 3.8FMIAEE62 pKa = 4.37AEE64 pKa = 4.17EE65 pKa = 4.4GLGRR69 pKa = 11.84ALADD73 pKa = 3.56RR74 pKa = 11.84EE75 pKa = 4.2VRR77 pKa = 11.84EE78 pKa = 4.75LIIAAIGMSLGQEE91 pKa = 4.08AEE93 pKa = 3.64IDD95 pKa = 3.47VCYY98 pKa = 10.67ASEE101 pKa = 4.2LSAAACVRR109 pKa = 11.84LMSDD113 pKa = 3.31DD114 pKa = 3.8WEE116 pKa = 4.49EE117 pKa = 4.14SCEE120 pKa = 4.0DD121 pKa = 4.14LVSGACRR128 pKa = 11.84DD129 pKa = 3.87VEE131 pKa = 4.17QLPLVDD137 pKa = 5.5IYY139 pKa = 11.75ACYY142 pKa = 10.34EE143 pKa = 4.07GDD145 pKa = 4.31DD146 pKa = 3.66GAFYY150 pKa = 11.14DD151 pKa = 5.11EE152 pKa = 4.84IPEE155 pKa = 4.04EE156 pKa = 4.35AEE158 pKa = 3.9PEE160 pKa = 4.08DD161 pKa = 4.5FRR163 pKa = 11.84EE164 pKa = 4.26LTAADD169 pKa = 3.34IFFCEE174 pKa = 4.53GAEE177 pKa = 3.74PDD179 pKa = 4.1YY180 pKa = 11.08IEE182 pKa = 5.46EE183 pKa = 4.12ILEE186 pKa = 4.13VMSVPEE192 pKa = 3.97HH193 pKa = 6.39HH194 pKa = 7.3SYY196 pKa = 11.28DD197 pKa = 3.81YY198 pKa = 11.21LVPEE202 pKa = 5.07LMLSDD207 pKa = 5.26DD208 pKa = 4.37EE209 pKa = 5.59DD210 pKa = 6.35GEE212 pKa = 4.32MEE214 pKa = 3.99MAEE217 pKa = 4.2EE218 pKa = 4.31EE219 pKa = 4.52EE220 pKa = 4.33ILL222 pKa = 4.49

Molecular weight: 24.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P8ENG1|A0A2P8ENG1_9FUSO Ribosomal RNA small subunit methyltransferase G OS=Fusobacterium naviforme OX=77917 GN=rsmG PE=3 SV=1
MM1 pKa = 7.92RR2 pKa = 11.84KK3 pKa = 8.48GTMTFQPHH11 pKa = 5.66NAQKK15 pKa = 10.45FRR17 pKa = 11.84VHH19 pKa = 6.5GFRR22 pKa = 11.84ARR24 pKa = 11.84MATKK28 pKa = 10.36GGRR31 pKa = 11.84KK32 pKa = 8.97VLAARR37 pKa = 11.84RR38 pKa = 11.84AKK40 pKa = 10.26GRR42 pKa = 11.84AKK44 pKa = 10.1LTVV47 pKa = 3.04

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2187

0

2187

714170

39

3134

326.6

36.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.069 ± 0.065

1.462 ± 0.02

5.173 ± 0.042

7.964 ± 0.058

3.862 ± 0.034

7.596 ± 0.043

1.808 ± 0.024

6.348 ± 0.048

5.343 ± 0.052

9.824 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.901 ± 0.025

3.563 ± 0.034

3.634 ± 0.033

3.218 ± 0.027

6.041 ± 0.053

6.106 ± 0.043

5.033 ± 0.033

6.522 ± 0.041

0.905 ± 0.018

3.626 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski