Acidovorax sp. MR-S7

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax; unclassified Acidovorax

Average proteome isoelectric point is 7.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4762 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A081B621|A0A081B621_9BURK Uncharacterized protein OS=Acidovorax sp. MR-S7 OX=1268622 GN=AVS7_00124 PE=4 SV=1
MM1 pKa = 7.26SAVAEE6 pKa = 4.15NTPTDD11 pKa = 3.66MPAPIVFTDD20 pKa = 3.68SAAAKK25 pKa = 10.02VADD28 pKa = 5.45LIAEE32 pKa = 4.31EE33 pKa = 4.82GNPDD37 pKa = 2.99LKK39 pKa = 11.13LRR41 pKa = 11.84VFVQGGGCSGFQYY54 pKa = 10.94GFTFDD59 pKa = 4.81EE60 pKa = 4.64ITNEE64 pKa = 4.77DD65 pKa = 4.2DD66 pKa = 3.25TTMTKK71 pKa = 10.66NGVSLLIDD79 pKa = 3.54AMSYY83 pKa = 10.32QYY85 pKa = 11.5LVGAEE90 pKa = 3.79IDD92 pKa = 3.91YY93 pKa = 11.36KK94 pKa = 11.19EE95 pKa = 4.67DD96 pKa = 3.23LQGAQFVIKK105 pKa = 10.44NPNAQTTCGCGSSFSAA121 pKa = 4.79

Molecular weight: 12.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A1VMJ3|A0A0A1VMJ3_9BURK Peptide chain release factor 2 OS=Acidovorax sp. MR-S7 OX=1268622 GN=prfB PE=3 SV=1
MM1 pKa = 6.87STRR4 pKa = 11.84RR5 pKa = 11.84PLVHH9 pKa = 7.15LLPGLALCGAVTLVSLGLEE28 pKa = 4.08HH29 pKa = 7.98VEE31 pKa = 3.95AALTGRR37 pKa = 11.84AWLEE41 pKa = 3.68ALVLSIVIGTLLRR54 pKa = 11.84TAWKK58 pKa = 9.16PPASFEE64 pKa = 5.0PGIQCAAKK72 pKa = 8.99TLMEE76 pKa = 4.44AAVMLMGATVSFGAILQAGTPLLAGIVLTVFATIAVSFSLGRR118 pKa = 11.84FFGLPAKK125 pKa = 9.54MAALVACGNSICGNSAIAAVAPAIDD150 pKa = 4.08ADD152 pKa = 4.07SRR154 pKa = 11.84DD155 pKa = 3.7VTTAIAFTAVLGIVVVLLIPVIAHH179 pKa = 5.35VLHH182 pKa = 6.7LNAAASGVLAGLTVYY197 pKa = 10.51AVPQVLAAAAPMGAAAVQVGTLVKK221 pKa = 10.38LIRR224 pKa = 11.84VLMLGPVVATLSILYY239 pKa = 9.83ARR241 pKa = 11.84SRR243 pKa = 11.84RR244 pKa = 11.84SEE246 pKa = 3.86PRR248 pKa = 11.84QAAPRR253 pKa = 11.84RR254 pKa = 11.84SLTQYY259 pKa = 10.39LPVFILVFLALALIRR274 pKa = 11.84SIGLLPQALVAPASSLSGLLTIVAMAGLGLGVDD307 pKa = 4.27LRR309 pKa = 11.84SVTAAGPRR317 pKa = 11.84VSIVVTLSLVVLGGFAMLVLHH338 pKa = 6.72ALKK341 pKa = 10.58LAA343 pKa = 4.09

Molecular weight: 34.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4762

0

4762

1533141

20

1978

322.0

34.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.81 ± 0.057

0.978 ± 0.011

5.027 ± 0.022

5.1 ± 0.034

3.276 ± 0.019

8.656 ± 0.034

2.386 ± 0.023

3.934 ± 0.024

2.878 ± 0.03

10.816 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.434 ± 0.016

2.319 ± 0.024

5.544 ± 0.026

4.326 ± 0.026

7.2 ± 0.041

4.914 ± 0.023

5.073 ± 0.034

7.608 ± 0.034

1.541 ± 0.017

2.18 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski