Gordonia soli NBRC 108243

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Gordoniaceae; Gordonia; Gordonia soli

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4907 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M0QIR8|M0QIR8_9ACTN Methionine import ATP-binding protein MetN OS=Gordonia soli NBRC 108243 OX=1223545 GN=metN PE=3 SV=1
MM1 pKa = 7.7TDD3 pKa = 2.96VFDD6 pKa = 5.69GDD8 pKa = 3.92RR9 pKa = 11.84LLQAVDD15 pKa = 3.38VARR18 pKa = 11.84AALIDD23 pKa = 5.07DD24 pKa = 4.75GQQPGAHH31 pKa = 6.83LDD33 pKa = 3.49AGVEE37 pKa = 4.15GDD39 pKa = 3.54WAVAHH44 pKa = 6.03YY45 pKa = 8.73FAADD49 pKa = 3.02IPGYY53 pKa = 10.19RR54 pKa = 11.84GWQWCVVLSGAPGSDD69 pKa = 3.91EE70 pKa = 3.86ITVSEE75 pKa = 4.47VVLLPGEE82 pKa = 4.56GSLLAPTWVPWIEE95 pKa = 3.83RR96 pKa = 11.84VAAGDD101 pKa = 4.2LGPGDD106 pKa = 4.56VLAADD111 pKa = 4.46PDD113 pKa = 4.18DD114 pKa = 3.97VRR116 pKa = 11.84LVPNQIDD123 pKa = 3.91TEE125 pKa = 4.69DD126 pKa = 4.14EE127 pKa = 4.08FHH129 pKa = 7.52LDD131 pKa = 3.94PDD133 pKa = 4.94DD134 pKa = 6.62DD135 pKa = 4.52DD136 pKa = 6.34PEE138 pKa = 7.16DD139 pKa = 3.41IGQIAGEE146 pKa = 4.16LGLGRR151 pKa = 11.84RR152 pKa = 11.84RR153 pKa = 11.84LLSPEE158 pKa = 3.99GRR160 pKa = 11.84DD161 pKa = 3.07EE162 pKa = 4.48AAQRR166 pKa = 11.84WFDD169 pKa = 3.54GDD171 pKa = 4.18FGPASEE177 pKa = 4.5MAQAAPYY184 pKa = 8.37PCCTCGFYY192 pKa = 11.12VPLGGALRR200 pKa = 11.84PAFGACANEE209 pKa = 3.94YY210 pKa = 10.33AADD213 pKa = 3.89GRR215 pKa = 11.84VVAADD220 pKa = 3.87YY221 pKa = 11.38GCGAHH226 pKa = 6.99SDD228 pKa = 3.68VAPPKK233 pKa = 10.45GGEE236 pKa = 3.94GSPAYY241 pKa = 9.91DD242 pKa = 4.15AYY244 pKa = 11.12DD245 pKa = 4.21DD246 pKa = 4.24GAVEE250 pKa = 4.2IVEE253 pKa = 4.29ITPEE257 pKa = 4.13PATVGADD264 pKa = 3.31ADD266 pKa = 4.19GSS268 pKa = 3.93

Molecular weight: 27.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M0QH84|M0QH84_9ACTN Putative fatty-acid--CoA ligase OS=Gordonia soli NBRC 108243 OX=1223545 GN=GS4_11_01570 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84LRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVNGRR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 10.03GRR42 pKa = 11.84EE43 pKa = 3.54KK44 pKa = 10.3LTAA47 pKa = 4.1

Molecular weight: 5.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4907

0

4907

1606877

40

7062

327.5

35.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.833 ± 0.043

0.646 ± 0.01

6.933 ± 0.034

5.151 ± 0.031

2.93 ± 0.019

9.08 ± 0.034

2.152 ± 0.016

4.52 ± 0.024

1.874 ± 0.028

9.389 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.811 ± 0.014

1.966 ± 0.021

5.648 ± 0.026

2.67 ± 0.018

7.601 ± 0.036

5.874 ± 0.026

6.465 ± 0.023

9.058 ± 0.036

1.442 ± 0.013

1.958 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski