Gordonia phage Coeur

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y6EFD0|A0A4Y6EFD0_9CAUD Immunity repressor OS=Gordonia phage Coeur OX=2571246 GN=20 PE=4 SV=1
MM1 pKa = 7.94AIRR4 pKa = 11.84RR5 pKa = 11.84PPLALGPGSLVFGAVGSQLDD25 pKa = 3.58ISCQVTAAKK34 pKa = 9.1VTFDD38 pKa = 4.01NDD40 pKa = 4.02KK41 pKa = 11.28EE42 pKa = 4.44DD43 pKa = 5.67DD44 pKa = 4.17LPTLCGSTIVGEE56 pKa = 4.32KK57 pKa = 10.36SYY59 pKa = 9.16TAQLEE64 pKa = 4.11FSAAQDD70 pKa = 3.34IEE72 pKa = 4.64ADD74 pKa = 4.43GLIDD78 pKa = 3.81WTWKK82 pKa = 9.77NAGAEE87 pKa = 4.47VPFSFIPKK95 pKa = 8.82EE96 pKa = 4.16GEE98 pKa = 3.79TAAVTGVVVVDD109 pKa = 3.75PVEE112 pKa = 4.1FGGDD116 pKa = 3.27VKK118 pKa = 10.85KK119 pKa = 11.03RR120 pKa = 11.84NISDD124 pKa = 3.91AEE126 pKa = 4.11WNIVGMPAFTPDD138 pKa = 2.87STADD142 pKa = 3.4STEE145 pKa = 3.91YY146 pKa = 10.47PPLEE150 pKa = 4.49DD151 pKa = 3.72

Molecular weight: 16.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y6EJ92|A0A4Y6EJ92_9CAUD Uncharacterized protein OS=Gordonia phage Coeur OX=2571246 GN=13 PE=4 SV=1
MM1 pKa = 7.16ARR3 pKa = 11.84KK4 pKa = 8.34YY5 pKa = 9.43TIDD8 pKa = 3.55STPWSAVVVCNRR20 pKa = 11.84RR21 pKa = 11.84GCFWRR26 pKa = 11.84GFAHH30 pKa = 6.55TKK32 pKa = 8.61PSAYY36 pKa = 10.13RR37 pKa = 11.84LVADD41 pKa = 4.2HH42 pKa = 7.04LRR44 pKa = 11.84RR45 pKa = 11.84AHH47 pKa = 7.29DD48 pKa = 4.08DD49 pKa = 3.07AAAADD54 pKa = 4.49DD55 pKa = 4.4ARR57 pKa = 11.84QSAQRR62 pKa = 11.84HH63 pKa = 4.58NKK65 pKa = 7.08TFRR68 pKa = 11.84NQRR71 pKa = 11.84APGGKK76 pKa = 9.04SAAA79 pKa = 3.9

Molecular weight: 8.85 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

26

0

26

5130

35

683

197.3

21.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.893 ± 1.013

0.819 ± 0.202

6.335 ± 0.651

4.191 ± 0.434

2.573 ± 0.196

8.402 ± 0.488

2.222 ± 0.343

4.932 ± 0.5

1.618 ± 0.195

7.875 ± 0.241

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.105 ± 0.171

3.021 ± 0.369

6.199 ± 0.38

2.573 ± 0.235

7.544 ± 0.722

5.361 ± 0.356

7.29 ± 0.417

7.563 ± 0.468

2.359 ± 0.29

2.125 ± 0.296
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski