Gigaspora rosea

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Diversisporales; Gigasporaceae; Gigaspora

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 31020 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A397U618|A0A397U618_9GLOM Uncharacterized protein (Fragment) OS=Gigaspora rosea OX=44941 GN=C2G38_2117867 PE=4 SV=1
MM1 pKa = 7.71SDD3 pKa = 3.4SYY5 pKa = 11.49HH6 pKa = 6.86PSLYY10 pKa = 10.51SYY12 pKa = 11.35LKK14 pKa = 10.0DD15 pKa = 3.25TEE17 pKa = 4.37NYY19 pKa = 9.97NFYY22 pKa = 10.76EE23 pKa = 3.84FLIIHH28 pKa = 6.61RR29 pKa = 11.84NVVVNSPPFNDD40 pKa = 4.95DD41 pKa = 4.38LILINGTLGEE51 pKa = 4.18ITDD54 pKa = 4.21IVNKK58 pKa = 10.19FYY60 pKa = 8.07TTQGTSSQDD69 pKa = 3.1LDD71 pKa = 3.72STINPSSSASEE82 pKa = 3.68GDD84 pKa = 3.25EE85 pKa = 4.03ANIIEE90 pKa = 5.11DD91 pKa = 4.94LDD93 pKa = 4.06TSDD96 pKa = 5.45HH97 pKa = 7.57DD98 pKa = 4.06EE99 pKa = 5.74LSNQDD104 pKa = 3.38NLVNLEE110 pKa = 4.0PLRR113 pKa = 11.84NDD115 pKa = 3.75SSSQDD120 pKa = 3.76DD121 pKa = 4.44LNNMNNLEE129 pKa = 4.64PPSSHH134 pKa = 7.74DD135 pKa = 3.93DD136 pKa = 4.34LIHH139 pKa = 7.37LEE141 pKa = 4.73SLNQDD146 pKa = 2.83NDD148 pKa = 3.65SYY150 pKa = 11.28QVQFIIEE157 pKa = 4.28KK158 pKa = 9.95EE159 pKa = 3.78IMINIILVLVEE170 pKa = 3.96

Molecular weight: 19.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A397UBZ8|A0A397UBZ8_9GLOM Uncharacterized protein OS=Gigaspora rosea OX=44941 GN=C2G38_2120278 PE=4 SV=1
MM1 pKa = 7.23LVVAVSRR8 pKa = 11.84TALIAAVIAANSVSSLTLRR27 pKa = 11.84SASSLALRR35 pKa = 11.84SASSLALRR43 pKa = 11.84SVSSLTLRR51 pKa = 11.84SASSLALRR59 pKa = 11.84SASSLALRR67 pKa = 11.84SASSLALRR75 pKa = 11.84SASSLALRR83 pKa = 11.84SASSLALRR91 pKa = 11.84SASSLALRR99 pKa = 11.84LASSLLYY106 pKa = 10.51VQLPLL111 pKa = 4.99

Molecular weight: 11.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

31016

4

31020

9364735

49

5216

301.9

34.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.792 ± 0.012

1.662 ± 0.007

5.654 ± 0.011

6.764 ± 0.016

4.683 ± 0.011

4.588 ± 0.015

2.156 ± 0.007

8.185 ± 0.014

7.725 ± 0.017

9.407 ± 0.018

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.039 ± 0.006

6.905 ± 0.015

3.944 ± 0.013

3.762 ± 0.011

4.254 ± 0.012

7.798 ± 0.016

5.468 ± 0.012

5.031 ± 0.011

1.168 ± 0.005

4.015 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski