Planctomycetales bacterium 10988

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes; Planctomycetia; Planctomycetales; unclassified Planctomycetales

Average proteome isoelectric point is 5.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4056 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A5Q3LFH9|A0A5Q3LFH9_9BACT Tripeptidyl-peptidase II OS=Planctomycetales bacterium 10988 OX=2603660 GN=PBC10988_40250 PE=4 SV=1
MM1 pKa = 7.37KK2 pKa = 9.68WLAPFRR8 pKa = 11.84RR9 pKa = 11.84WQRR12 pKa = 11.84NKK14 pKa = 10.29SQQASAARR22 pKa = 11.84ITPSTPQRR30 pKa = 11.84PIRR33 pKa = 11.84RR34 pKa = 11.84CRR36 pKa = 11.84IEE38 pKa = 3.94AMEE41 pKa = 4.11RR42 pKa = 11.84RR43 pKa = 11.84EE44 pKa = 4.09MLSADD49 pKa = 3.84PLHH52 pKa = 6.72FGAVYY57 pKa = 10.87YY58 pKa = 10.68EE59 pKa = 4.08DD60 pKa = 5.29AFLSGADD67 pKa = 3.7FSNPGDD73 pKa = 4.02LIEE76 pKa = 4.24ITFEE80 pKa = 3.9GGAAGTQMHH89 pKa = 6.91SLTIDD94 pKa = 4.08LDD96 pKa = 4.13PNAGGLEE103 pKa = 4.08AGDD106 pKa = 4.61RR107 pKa = 11.84IFDD110 pKa = 3.92TLAGGLGSSGAVPLTIVEE128 pKa = 4.29NNGIDD133 pKa = 3.81SINFSLSSNDD143 pKa = 3.95LDD145 pKa = 4.0GQTSLTITFSGFDD158 pKa = 3.33VGDD161 pKa = 3.75SFTIGVDD168 pKa = 2.8IDD170 pKa = 3.82EE171 pKa = 4.43VAEE174 pKa = 4.6GGGLTPTVEE183 pKa = 4.11GAEE186 pKa = 4.38FEE188 pKa = 4.76GSTLTATFSADD199 pKa = 2.88TYY201 pKa = 11.26YY202 pKa = 11.32DD203 pKa = 3.44STKK206 pKa = 10.25TATFYY211 pKa = 11.45NQFSLDD217 pKa = 3.6GTGLQLPPDD226 pKa = 4.71DD227 pKa = 5.2YY228 pKa = 11.33IPPNSVPAPDD238 pKa = 3.72YY239 pKa = 8.79TAGAIGEE246 pKa = 4.3LQQVPLPITISGTVFEE262 pKa = 5.79DD263 pKa = 3.94GNLNNHH269 pKa = 5.94QDD271 pKa = 3.4GGEE274 pKa = 3.84QGIGGVEE281 pKa = 3.9LEE283 pKa = 3.91LWQWNGSQYY292 pKa = 11.01EE293 pKa = 4.25STGRR297 pKa = 11.84VTTTDD302 pKa = 2.96SQGDD306 pKa = 3.7YY307 pKa = 10.94HH308 pKa = 8.25FDD310 pKa = 3.55DD311 pKa = 4.5VDD313 pKa = 3.58PGRR316 pKa = 11.84YY317 pKa = 8.22RR318 pKa = 11.84VVEE321 pKa = 4.09HH322 pKa = 6.39QPDD325 pKa = 4.69GYY327 pKa = 10.56HH328 pKa = 6.41SVGAEE333 pKa = 3.57IGSVDD338 pKa = 3.53GSPRR342 pKa = 11.84GSVFSPDD349 pKa = 3.15ILTDD353 pKa = 3.37IQLVGGDD360 pKa = 3.85DD361 pKa = 3.75TIEE364 pKa = 4.12NNFAEE369 pKa = 4.51AAANSIEE376 pKa = 3.84GVVYY380 pKa = 10.44HH381 pKa = 7.36DD382 pKa = 4.52RR383 pKa = 11.84DD384 pKa = 3.32NDD386 pKa = 3.61GFQDD390 pKa = 3.48VGEE393 pKa = 4.21EE394 pKa = 4.54GIAGAEE400 pKa = 4.0VQLFDD405 pKa = 3.93QQGNLVATTFTNAQGEE421 pKa = 4.55YY422 pKa = 10.65LFDD425 pKa = 4.79DD426 pKa = 4.16LHH428 pKa = 6.67FGSYY432 pKa = 9.94SLQEE436 pKa = 4.04IQPAGYY442 pKa = 10.59LDD444 pKa = 4.16GLDD447 pKa = 3.49TAGSVGGLAEE457 pKa = 4.27NPGDD461 pKa = 5.11AIRR464 pKa = 11.84QIQLTSGTHH473 pKa = 4.38ATDD476 pKa = 3.46YY477 pKa = 11.29LFGEE481 pKa = 4.96LVPASISGQVFADD494 pKa = 4.17LDD496 pKa = 4.06GDD498 pKa = 4.37CYY500 pKa = 10.88FDD502 pKa = 4.37PEE504 pKa = 4.18EE505 pKa = 4.6SPIEE509 pKa = 3.93GVEE512 pKa = 3.41IHH514 pKa = 6.68LRR516 pKa = 11.84DD517 pKa = 3.57VQGNIVATTQTDD529 pKa = 3.41AQGLYY534 pKa = 10.22QFDD537 pKa = 3.67NLRR540 pKa = 11.84PGEE543 pKa = 4.21YY544 pKa = 8.52TVHH547 pKa = 6.06EE548 pKa = 4.36VQPFGYY554 pKa = 8.61YY555 pKa = 9.34QGGVVVGSAGGVISTFEE572 pKa = 3.93QDD574 pKa = 3.35TVTSIALVSGEE585 pKa = 3.94NAAGYY590 pKa = 6.59TFCEE594 pKa = 4.51VPPATLAGNVYY605 pKa = 10.45VDD607 pKa = 3.87ANQNGVRR614 pKa = 11.84DD615 pKa = 3.99GGEE618 pKa = 3.67QGIGGVTLEE627 pKa = 4.57LRR629 pKa = 11.84DD630 pKa = 3.69AGGSVVATTATDD642 pKa = 3.29STGAYY647 pKa = 9.89LFDD650 pKa = 5.36SILPGEE656 pKa = 4.33YY657 pKa = 9.34SVHH660 pKa = 5.55EE661 pKa = 4.26VQPFGYY667 pKa = 10.05FDD669 pKa = 3.96GEE671 pKa = 4.21EE672 pKa = 4.42SIGTAGGVLGPGNDD686 pKa = 3.65VISQVTLHH694 pKa = 6.54PAEE697 pKa = 4.89HH698 pKa = 5.35ATEE701 pKa = 4.28YY702 pKa = 11.29NFGEE706 pKa = 4.63LLPASIQGSVFADD719 pKa = 3.63LDD721 pKa = 3.97GDD723 pKa = 4.79CIQDD727 pKa = 3.69PGEE730 pKa = 4.39SPLEE734 pKa = 3.82NVVIQLLNGNGDD746 pKa = 3.99VIDD749 pKa = 4.06STVTDD754 pKa = 3.82ANGDD758 pKa = 3.64YY759 pKa = 10.68SFEE762 pKa = 4.16SLPPGTYY769 pKa = 10.26GIRR772 pKa = 11.84EE773 pKa = 4.14IQPTGYY779 pKa = 9.62FQGGTVVGSAGGTLAPGDD797 pKa = 4.22ADD799 pKa = 3.77TIVAIEE805 pKa = 4.0LHH807 pKa = 6.27SGEE810 pKa = 4.55AATEE814 pKa = 4.17YY815 pKa = 10.53VFCEE819 pKa = 4.22HH820 pKa = 7.4PPAQLSGEE828 pKa = 4.4VYY830 pKa = 10.67VDD832 pKa = 3.5QNQSGTLDD840 pKa = 3.3SGEE843 pKa = 4.08RR844 pKa = 11.84GIGGVTLEE852 pKa = 4.45LLDD855 pKa = 4.06VNGQVVATTVTNDD868 pKa = 2.92AGHH871 pKa = 6.3YY872 pKa = 10.55LFDD875 pKa = 3.68QLPPGTYY882 pKa = 9.83SIRR885 pKa = 11.84EE886 pKa = 4.05IQPAGYY892 pKa = 10.12FDD894 pKa = 6.11GIDD897 pKa = 3.33QAGSLGGIAQNPGDD911 pKa = 4.23QISQIVLGPGMQGVEE926 pKa = 4.06YY927 pKa = 10.56RR928 pKa = 11.84FGEE931 pKa = 4.19YY932 pKa = 10.31EE933 pKa = 3.88PASLHH938 pKa = 5.65GRR940 pKa = 11.84VFADD944 pKa = 4.57LDD946 pKa = 3.98GDD948 pKa = 4.71CILDD952 pKa = 3.85ANEE955 pKa = 3.88TPIAGVQIEE964 pKa = 4.57LLDD967 pKa = 3.65GTGQVIATTTTDD979 pKa = 2.71AGGDD983 pKa = 3.62YY984 pKa = 10.42SFEE987 pKa = 4.06GLPPGTYY994 pKa = 9.5GVRR997 pKa = 11.84EE998 pKa = 4.06IQPAGYY1004 pKa = 8.56YY1005 pKa = 9.86QGGTMVGTAGGTLSSGDD1022 pKa = 3.48SDD1024 pKa = 4.1TIVAIEE1030 pKa = 4.4LGSGTVATEE1039 pKa = 4.12YY1040 pKa = 10.68VFCEE1044 pKa = 4.12HH1045 pKa = 7.18PPSKK1049 pKa = 10.45LAGSVYY1055 pKa = 10.71VDD1057 pKa = 3.81ANQNGNFDD1065 pKa = 3.65SGEE1068 pKa = 3.96TGIAGVEE1075 pKa = 3.88LEE1077 pKa = 5.05LYY1079 pKa = 10.17NSNGDD1084 pKa = 3.63LVATVVTDD1092 pKa = 3.32EE1093 pKa = 4.12TGFYY1097 pKa = 10.45CFEE1100 pKa = 4.35NLPPDD1105 pKa = 3.87TYY1107 pKa = 10.64TIEE1110 pKa = 4.39EE1111 pKa = 4.27VQPPGYY1117 pKa = 10.0YY1118 pKa = 10.35DD1119 pKa = 4.46GVDD1122 pKa = 3.3TPGTLGGIPEE1132 pKa = 4.39NPGDD1136 pKa = 4.4SIRR1139 pKa = 11.84GIALPPGTTGEE1150 pKa = 4.11EE1151 pKa = 4.7YY1152 pKa = 11.34VFGEE1156 pKa = 4.33VLAGRR1161 pKa = 11.84ISGRR1165 pKa = 11.84VHH1167 pKa = 7.08ADD1169 pKa = 3.04LDD1171 pKa = 4.13GDD1173 pKa = 4.64CIFDD1177 pKa = 4.03PEE1179 pKa = 4.21EE1180 pKa = 4.48SPLVGVEE1187 pKa = 4.79IEE1189 pKa = 4.51LLDD1192 pKa = 4.63DD1193 pKa = 4.86AGQVVATTFTNDD1205 pKa = 2.77AGEE1208 pKa = 4.16YY1209 pKa = 10.57LFDD1212 pKa = 4.13NLPPGTYY1219 pKa = 8.97SVRR1222 pKa = 11.84EE1223 pKa = 3.84IQPAGFFDD1231 pKa = 4.06GMASVGSGTGTVTDD1245 pKa = 4.38SNTIAAISIGSGQTLVDD1262 pKa = 3.47YY1263 pKa = 9.62DD1264 pKa = 4.0FCEE1267 pKa = 4.4EE1268 pKa = 3.97PHH1270 pKa = 6.62ASLSGRR1276 pKa = 11.84VYY1278 pKa = 10.59QDD1280 pKa = 2.88GPNIVLSAGTTIDD1293 pKa = 4.43LSNTRR1298 pKa = 11.84DD1299 pKa = 4.02GILSADD1305 pKa = 3.85DD1306 pKa = 3.58TPIAGVTLILGDD1318 pKa = 3.83TNGNPILDD1326 pKa = 3.52ASGNLITTVTGSDD1339 pKa = 2.99GSFRR1343 pKa = 11.84FDD1345 pKa = 3.15ALHH1348 pKa = 6.45AGSYY1352 pKa = 10.82SLLQVQPDD1360 pKa = 3.96DD1361 pKa = 3.92YY1362 pKa = 11.72VDD1364 pKa = 3.81NRR1366 pKa = 11.84DD1367 pKa = 3.42HH1368 pKa = 7.34AGDD1371 pKa = 3.75AGGTAVNPGDD1381 pKa = 4.7AILGIEE1387 pKa = 4.79LKK1389 pKa = 9.88TGQQASLYY1397 pKa = 9.32HH1398 pKa = 5.95FSEE1401 pKa = 4.97LKK1403 pKa = 10.78VEE1405 pKa = 4.37TPPGLIIRR1413 pKa = 11.84PPLDD1417 pKa = 3.99PLPSLGGPVLVGAPPAPAPIIVAPPVVSVNRR1448 pKa = 11.84VDD1450 pKa = 4.58LGAGLGVGNAGDD1462 pKa = 4.39GYY1464 pKa = 8.06TWHH1467 pKa = 7.22LSVIDD1472 pKa = 3.72GGFPRR1477 pKa = 11.84GNVSTASADD1486 pKa = 3.53NVIRR1490 pKa = 11.84PVYY1493 pKa = 10.03FSPEE1497 pKa = 3.7TWEE1500 pKa = 4.69GPDD1503 pKa = 3.21MTEE1506 pKa = 5.36SLWQLPSGTDD1516 pKa = 3.18ALIVDD1521 pKa = 4.46RR1522 pKa = 11.84SFAFGPLEE1530 pKa = 4.48GIPVTGDD1537 pKa = 3.19FNGDD1541 pKa = 3.09GVTDD1545 pKa = 3.31IGIFVDD1551 pKa = 4.74GEE1553 pKa = 4.03WFIDD1557 pKa = 3.52ANGNGRR1563 pKa = 11.84WDD1565 pKa = 4.35EE1566 pKa = 3.87GDD1568 pKa = 2.95MWAKK1572 pKa = 10.21LGKK1575 pKa = 9.61PGDD1578 pKa = 3.88RR1579 pKa = 11.84PVVGDD1584 pKa = 3.48WNGDD1588 pKa = 3.35GKK1590 pKa = 11.35SDD1592 pKa = 3.08IGVYY1596 pKa = 9.96GLPWEE1601 pKa = 4.73GDD1603 pKa = 3.44DD1604 pKa = 3.76RR1605 pKa = 11.84ALAAEE1610 pKa = 4.27VGLPSAEE1617 pKa = 3.97NPPIGVQKK1625 pKa = 10.52NVPPRR1630 pKa = 11.84QDD1632 pKa = 3.34EE1633 pKa = 4.48APVTPRR1639 pKa = 11.84LLKK1642 pKa = 9.13HH1643 pKa = 5.18TAAGEE1648 pKa = 4.14VRR1650 pKa = 11.84ADD1652 pKa = 4.39LIDD1655 pKa = 3.61HH1656 pKa = 5.92VFAYY1660 pKa = 9.6GQAGDD1665 pKa = 4.34IPLSGDD1671 pKa = 3.03WNGDD1675 pKa = 3.02GMDD1678 pKa = 3.2KK1679 pKa = 10.99VGVYY1683 pKa = 10.55RR1684 pKa = 11.84NGIWYY1689 pKa = 9.93LDD1691 pKa = 3.55VDD1693 pKa = 3.94GDD1695 pKa = 4.36GQFTATDD1702 pKa = 3.73EE1703 pKa = 4.35VVHH1706 pKa = 7.34LGEE1709 pKa = 5.35DD1710 pKa = 3.09VGLPIVGDD1718 pKa = 3.79FDD1720 pKa = 5.51GDD1722 pKa = 4.08GVDD1725 pKa = 4.64EE1726 pKa = 4.94LGLYY1730 pKa = 9.44QEE1732 pKa = 5.2GVWKK1736 pKa = 10.29IDD1738 pKa = 3.41TNGDD1742 pKa = 3.59HH1743 pKa = 7.07QLDD1746 pKa = 3.85ALDD1749 pKa = 4.79KK1750 pKa = 9.68VFEE1753 pKa = 4.66LGGPEE1758 pKa = 4.05SLPIVGDD1765 pKa = 3.57FDD1767 pKa = 5.24GDD1769 pKa = 4.0GIEE1772 pKa = 4.21EE1773 pKa = 4.15VGLYY1777 pKa = 10.23RR1778 pKa = 11.84PGAGYY1783 pKa = 9.96DD1784 pKa = 3.69ANSEE1788 pKa = 4.0AAQDD1792 pKa = 3.29HH1793 pKa = 6.91DD1794 pKa = 3.94VAQRR1798 pKa = 11.84EE1799 pKa = 4.43SSRR1802 pKa = 11.84KK1803 pKa = 9.66RR1804 pKa = 11.84II1805 pKa = 3.64

Molecular weight:
189.37 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A5Q3L391|A0A5Q3L391_9BACT Dehydrogenase OS=Planctomycetales bacterium 10988 OX=2603660 GN=PBC10988_5230 PE=3 SV=1
MM1 pKa = 6.91NTIIPLSDD9 pKa = 3.45EE10 pKa = 4.01QRR12 pKa = 11.84KK13 pKa = 8.48QLLNVYY19 pKa = 10.25RR20 pKa = 11.84SGTDD24 pKa = 2.96PRR26 pKa = 11.84MSRR29 pKa = 11.84RR30 pKa = 11.84AHH32 pKa = 5.47VLLLFADD39 pKa = 4.29GWTWQQIRR47 pKa = 11.84KK48 pKa = 9.29ALFCSNDD55 pKa = 3.45LIDD58 pKa = 3.32RR59 pKa = 11.84TRR61 pKa = 11.84RR62 pKa = 11.84RR63 pKa = 11.84FHH65 pKa = 6.68HH66 pKa = 6.34GGVPAVLQRR75 pKa = 11.84SDD77 pKa = 3.99ALPAASTSPGWWQRR91 pKa = 11.84VLKK94 pKa = 9.58WLTEE98 pKa = 4.07TTPGDD103 pKa = 3.28FGYY106 pKa = 10.46FRR108 pKa = 11.84SCWSCGLLAGLLAWEE123 pKa = 4.53TGVHH127 pKa = 6.51RR128 pKa = 11.84SAEE131 pKa = 4.17TIRR134 pKa = 11.84RR135 pKa = 11.84GLHH138 pKa = 5.88RR139 pKa = 11.84EE140 pKa = 3.46GDD142 pKa = 3.35VWRR145 pKa = 11.84RR146 pKa = 11.84PRR148 pKa = 11.84PVVGPTDD155 pKa = 3.58PDD157 pKa = 3.57YY158 pKa = 11.11SQKK161 pKa = 10.42LRR163 pKa = 11.84EE164 pKa = 4.16IRR166 pKa = 11.84HH167 pKa = 6.4LLDD170 pKa = 3.13QLPPSEE176 pKa = 4.11VAVFQDD182 pKa = 3.58EE183 pKa = 4.37VDD185 pKa = 3.66VNLNPKK191 pKa = 9.17IGPMWTPRR199 pKa = 11.84GQQAAVATPGNNEE212 pKa = 3.21KK213 pKa = 10.53RR214 pKa = 11.84YY215 pKa = 9.63LAGSLSWQTGRR226 pKa = 11.84LFVSPPQRR234 pKa = 11.84RR235 pKa = 11.84RR236 pKa = 11.84NADD239 pKa = 3.3LFLSHH244 pKa = 7.29LAEE247 pKa = 4.19LQQRR251 pKa = 11.84LRR253 pKa = 11.84RR254 pKa = 11.84YY255 pKa = 9.17RR256 pKa = 11.84VIHH259 pKa = 5.31VLCDD263 pKa = 3.04NAKK266 pKa = 9.48FHH268 pKa = 6.72NCRR271 pKa = 11.84KK272 pKa = 9.36VRR274 pKa = 11.84QALQQRR280 pKa = 11.84LGRR283 pKa = 11.84IRR285 pKa = 11.84LHH287 pKa = 6.45FLPKK291 pKa = 9.97YY292 pKa = 10.45APEE295 pKa = 4.12TNPIEE300 pKa = 4.27RR301 pKa = 11.84VWWHH305 pKa = 4.92LHH307 pKa = 3.84EE308 pKa = 5.17TITRR312 pKa = 11.84NHH314 pKa = 6.18RR315 pKa = 11.84CEE317 pKa = 4.0TLEE320 pKa = 3.72EE321 pKa = 4.44LLRR324 pKa = 11.84QTCSGG329 pKa = 3.43

Molecular weight:
38.3 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4056

0

4056

1770095

50

8529

436.4

48.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.21 ± 0.039

0.993 ± 0.015

5.582 ± 0.043

7.651 ± 0.047

4.1 ± 0.025

7.288 ± 0.051

2.152 ± 0.018

5.175 ± 0.026

4.306 ± 0.042

10.393 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.089 ± 0.017

3.373 ± 0.033

5.433 ± 0.033

4.707 ± 0.028

5.803 ± 0.045

6.493 ± 0.033

5.555 ± 0.044

6.296 ± 0.029

1.59 ± 0.018

2.813 ± 0.023

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski