Salmonella phage vB_SenS_SE1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Cornellvirus; unclassified Cornellvirus

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 63 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A481W586|A0A481W586_9CAUD Uncharacterized protein OS=Salmonella phage vB_SenS_SE1 OX=2530161 PE=4 SV=1
MM1 pKa = 6.5VARR4 pKa = 11.84YY5 pKa = 9.06RR6 pKa = 11.84FNYY9 pKa = 7.46VQEE12 pKa = 4.15MFEE15 pKa = 4.17TDD17 pKa = 3.69AGEE20 pKa = 4.25QYY22 pKa = 11.04CEE24 pKa = 4.14TEE26 pKa = 3.48RR27 pKa = 11.84DD28 pKa = 2.94EE29 pKa = 4.13WVRR32 pKa = 11.84YY33 pKa = 8.68EE34 pKa = 5.5DD35 pKa = 3.76YY36 pKa = 11.67AEE38 pKa = 4.33LKK40 pKa = 10.48EE41 pKa = 4.67LLDD44 pKa = 3.9ALAYY48 pKa = 10.45SVLNYY53 pKa = 9.63PLSPDD58 pKa = 3.48TEE60 pKa = 4.14EE61 pKa = 3.98LAKK64 pKa = 10.76GVLGVV69 pKa = 3.67

Molecular weight: 8.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A481W6Z8|A0A481W6Z8_9CAUD Uncharacterized protein OS=Salmonella phage vB_SenS_SE1 OX=2530161 PE=4 SV=1
MM1 pKa = 7.52SLATDD6 pKa = 3.38ILKK9 pKa = 10.37RR10 pKa = 11.84ANSDD14 pKa = 3.34LSPPSKK20 pKa = 10.44SIRR23 pKa = 11.84ADD25 pKa = 3.31YY26 pKa = 9.1MGPAIRR32 pKa = 11.84KK33 pKa = 6.74KK34 pKa = 10.59AKK36 pKa = 9.47RR37 pKa = 11.84AAPKK41 pKa = 10.45GPRR44 pKa = 11.84LNRR47 pKa = 11.84KK48 pKa = 4.78TVNYY52 pKa = 8.44VAPKK56 pKa = 8.35HH57 pKa = 4.95EE58 pKa = 4.5HH59 pKa = 4.99VAGVAFNSRR68 pKa = 11.84NNTWDD73 pKa = 3.12AYY75 pKa = 10.49FYY77 pKa = 11.23NGVKK81 pKa = 9.82TIRR84 pKa = 11.84IGMFHH89 pKa = 5.71TQARR93 pKa = 11.84ALIARR98 pKa = 11.84RR99 pKa = 11.84IYY101 pKa = 9.73MYY103 pKa = 9.49WRR105 pKa = 11.84KK106 pKa = 10.11CGFDD110 pKa = 3.89NIPNKK115 pKa = 9.56PEE117 pKa = 3.47RR118 pKa = 11.84RR119 pKa = 11.84LYY121 pKa = 10.15TMRR124 pKa = 11.84NYY126 pKa = 10.69SDD128 pKa = 3.46KK129 pKa = 11.39SS130 pKa = 3.41

Molecular weight: 15.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

63

0

63

12358

38

852

196.2

21.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.293 ± 0.589

1.084 ± 0.121

6.441 ± 0.252

6.441 ± 0.369

3.423 ± 0.16

7.566 ± 0.339

1.626 ± 0.191

5.09 ± 0.203

5.697 ± 0.355

7.606 ± 0.282

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.492 ± 0.111

4.758 ± 0.253

3.941 ± 0.255

4.256 ± 0.334

5.268 ± 0.209

5.931 ± 0.288

6.247 ± 0.372

7.04 ± 0.332

1.497 ± 0.171

3.302 ± 0.19
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski