Penicillium nordicum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12938 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M8P025|A0A0M8P025_9EURO Uncharacterized protein OS=Penicillium nordicum OX=229535 GN=ACN38_g8358 PE=4 SV=1
MM1 pKa = 7.13TFNVFLTGLLAATAAALPHH20 pKa = 5.95SARR23 pKa = 11.84SGEE26 pKa = 4.15SGAVEE31 pKa = 4.25TRR33 pKa = 11.84DD34 pKa = 3.57SSSGGLQIVNNMDD47 pKa = 3.23TDD49 pKa = 4.02VYY51 pKa = 11.16LWTTSSDD58 pKa = 3.31AGSMKK63 pKa = 10.11TLSTGGDD70 pKa = 3.79YY71 pKa = 11.37SEE73 pKa = 5.77DD74 pKa = 3.05WATNSNGGGISIKK87 pKa = 10.18MSTSEE92 pKa = 4.29SKK94 pKa = 11.07DD95 pKa = 3.2SVLQFEE101 pKa = 4.64YY102 pKa = 10.25TQDD105 pKa = 3.43GDD107 pKa = 4.04TLFWDD112 pKa = 4.11MSSIDD117 pKa = 4.43LDD119 pKa = 3.86STSEE123 pKa = 4.0FVKK126 pKa = 10.8SGFTVVPSDD135 pKa = 4.0SSCKK139 pKa = 10.14SVSCAAGDD147 pKa = 4.17AEE149 pKa = 5.81CKK151 pKa = 10.0DD152 pKa = 4.38AYY154 pKa = 10.57QLPDD158 pKa = 3.43DD159 pKa = 4.56VNTYY163 pKa = 10.49SCSLSSGFTLTLGG176 pKa = 3.59

Molecular weight: 18.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M8P0P1|A0A0M8P0P1_9EURO Non-specific serine/threonine protein kinase OS=Penicillium nordicum OX=229535 GN=ACN38_g10971 PE=4 SV=1
MM1 pKa = 7.49PVSPSRR7 pKa = 11.84TRR9 pKa = 11.84PSTAGRR15 pKa = 11.84TMSTTTSVPLPRR27 pKa = 11.84ARR29 pKa = 11.84TSVPASSSTTPSALFAPRR47 pKa = 11.84PGPIVGTVSARR58 pKa = 11.84LATSLSTLTSRR69 pKa = 5.13

Molecular weight: 7.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12938

0

12938

5328948

8

6304

411.9

45.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.189 ± 0.021

1.283 ± 0.009

5.596 ± 0.018

6.023 ± 0.026

3.872 ± 0.015

6.713 ± 0.02

2.473 ± 0.01

5.168 ± 0.018

4.649 ± 0.02

9.037 ± 0.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.272 ± 0.008

3.762 ± 0.012

6.072 ± 0.025

4.048 ± 0.018

5.961 ± 0.02

8.449 ± 0.024

6.021 ± 0.014

6.125 ± 0.016

1.469 ± 0.009

2.814 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski