Corynebacterium provencense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2661 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z3YNI0|A0A2Z3YNI0_9CORY Putative N-succinyldiaminopimelate aminotransferase DapC OS=Corynebacterium provencense OX=1737425 GN=dapC PE=4 SV=1
MM1 pKa = 7.62PRR3 pKa = 11.84RR4 pKa = 11.84SAVPTTAMSMTAVVLALLTGCSGEE28 pKa = 4.91DD29 pKa = 3.38PAASPTFTAAEE40 pKa = 4.33TTSDD44 pKa = 3.39NTGGDD49 pKa = 3.19TGGWDD54 pKa = 3.29STGPQPSATSDD65 pKa = 3.2TVAADD70 pKa = 3.61AVSGTTTVTPQSGADD85 pKa = 3.61APSSVPGADD94 pKa = 3.18RR95 pKa = 11.84PASLTEE101 pKa = 4.31SGWSGSSVRR110 pKa = 11.84CNTGDD115 pKa = 3.12PWVYY119 pKa = 10.36AAEE122 pKa = 4.44GAPGQVVICLDD133 pKa = 4.07DD134 pKa = 4.62DD135 pKa = 3.81ALYY138 pKa = 10.72AVDD141 pKa = 3.99TDD143 pKa = 3.65NPYY146 pKa = 11.24GGDD149 pKa = 3.22NAYY152 pKa = 10.36AATSAVCPVSGTGRR166 pKa = 11.84DD167 pKa = 3.19RR168 pKa = 11.84YY169 pKa = 9.42VWHH172 pKa = 6.94HH173 pKa = 7.15ADD175 pKa = 3.83TGWTEE180 pKa = 3.83YY181 pKa = 11.05DD182 pKa = 3.0GTTRR186 pKa = 11.84YY187 pKa = 10.79VMDD190 pKa = 3.91IFSGRR195 pKa = 11.84GRR197 pKa = 11.84PDD199 pKa = 2.75LTDD202 pKa = 3.28AANIVEE208 pKa = 4.35DD209 pKa = 4.95AYY211 pKa = 11.19DD212 pKa = 4.1GAWTNPDD219 pKa = 3.19VPVPTLRR226 pKa = 11.84WCRR229 pKa = 11.84HH230 pKa = 5.73AGDD233 pKa = 4.21SPSTNLLAGG242 pKa = 3.81

Molecular weight: 24.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z3YLS0|A0A2Z3YLS0_9CORY Catalase OS=Corynebacterium provencense OX=1737425 GN=katA PE=3 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84AHH17 pKa = 5.01KK18 pKa = 10.01HH19 pKa = 3.72GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84SKK40 pKa = 10.67GRR42 pKa = 11.84KK43 pKa = 9.06SLTAA47 pKa = 4.07

Molecular weight: 5.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2661

0

2661

922959

30

3136

346.8

37.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.902 ± 0.055

0.738 ± 0.014

6.709 ± 0.042

5.428 ± 0.042

2.921 ± 0.029

9.679 ± 0.045

2.068 ± 0.023

3.831 ± 0.034

1.971 ± 0.035

9.475 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.912 ± 0.021

2.119 ± 0.023

5.639 ± 0.036

2.567 ± 0.023

7.466 ± 0.051

5.986 ± 0.036

6.897 ± 0.039

9.357 ± 0.044

1.378 ± 0.019

1.957 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski