Amino acid dipepetide frequency for Fire ant associated circular virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.468AlaAla: 3.468 ± 2.488
0.0AlaCys: 0.0 ± 0.0
0.0AlaAsp: 0.0 ± 0.0
1.156AlaGlu: 1.156 ± 0.906
1.156AlaPhe: 1.156 ± 0.906
9.249AlaGly: 9.249 ± 4.9
2.312AlaHis: 2.312 ± 0.076
4.624AlaIle: 4.624 ± 0.152
8.092AlaLys: 8.092 ± 2.869
5.78AlaLeu: 5.78 ± 1.058
0.0AlaMet: 0.0 ± 0.0
1.156AlaAsn: 1.156 ± 0.906
4.624AlaPro: 4.624 ± 3.317
2.312AlaGln: 2.312 ± 1.659
3.468AlaArg: 3.468 ± 2.488
8.092AlaSer: 8.092 ± 4.071
9.249AlaThr: 9.249 ± 4.9
3.468AlaVal: 3.468 ± 2.488
1.156AlaTrp: 1.156 ± 0.906
1.156AlaTyr: 1.156 ± 0.906
0.0AlaXaa: 0.0 ± 0.0
Cys
1.156CysAla: 1.156 ± 0.829
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
4.624CysLys: 4.624 ± 1.887
1.156CysLeu: 1.156 ± 0.829
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.156CysPro: 1.156 ± 0.829
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
1.156CysThr: 1.156 ± 0.906
1.156CysVal: 1.156 ± 0.906
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.312AspAla: 2.312 ± 0.076
0.0AspCys: 0.0 ± 0.0
6.936AspAsp: 6.936 ± 5.433
3.468AspGlu: 3.468 ± 2.717
4.624AspPhe: 4.624 ± 1.887
2.312AspGly: 2.312 ± 0.076
2.312AspHis: 2.312 ± 1.811
4.624AspIle: 4.624 ± 0.152
2.312AspLys: 2.312 ± 1.811
8.092AspLeu: 8.092 ± 4.604
2.312AspMet: 2.312 ± 0.076
1.156AspAsn: 1.156 ± 0.906
2.312AspPro: 2.312 ± 1.811
0.0AspGln: 0.0 ± 0.0
3.468AspArg: 3.468 ± 2.717
3.468AspSer: 3.468 ± 0.982
5.78AspThr: 5.78 ± 2.793
2.312AspVal: 2.312 ± 1.811
0.0AspTrp: 0.0 ± 0.0
4.624AspTyr: 4.624 ± 0.152
0.0AspXaa: 0.0 ± 0.0
Glu
2.312GluAla: 2.312 ± 1.811
2.312GluCys: 2.312 ± 1.659
6.936GluAsp: 6.936 ± 3.698
3.468GluGlu: 3.468 ± 2.717
2.312GluPhe: 2.312 ± 1.659
3.468GluGly: 3.468 ± 2.717
1.156GluHis: 1.156 ± 0.906
2.312GluIle: 2.312 ± 1.811
2.312GluLys: 2.312 ± 1.811
3.468GluLeu: 3.468 ± 0.753
2.312GluMet: 2.312 ± 1.408
2.312GluAsn: 2.312 ± 0.076
2.312GluPro: 2.312 ± 1.811
1.156GluGln: 1.156 ± 0.829
0.0GluArg: 0.0 ± 0.0
1.156GluSer: 1.156 ± 0.906
3.468GluThr: 3.468 ± 0.982
2.312GluVal: 2.312 ± 1.811
1.156GluTrp: 1.156 ± 0.906
3.468GluTyr: 3.468 ± 0.753
0.0GluXaa: 0.0 ± 0.0
Phe
3.468PheAla: 3.468 ± 0.982
0.0PheCys: 0.0 ± 0.0
3.468PheAsp: 3.468 ± 2.717
3.468PheGlu: 3.468 ± 0.753
1.156PhePhe: 1.156 ± 0.906
3.468PheGly: 3.468 ± 2.488
0.0PheHis: 0.0 ± 0.0
5.78PheIle: 5.78 ± 1.058
2.312PheLys: 2.312 ± 0.076
1.156PheLeu: 1.156 ± 0.829
0.0PheMet: 0.0 ± 0.0
4.624PheAsn: 4.624 ± 0.152
4.624PhePro: 4.624 ± 3.317
2.312PheGln: 2.312 ± 0.076
1.156PheArg: 1.156 ± 0.906
1.156PheSer: 1.156 ± 0.829
2.312PheThr: 2.312 ± 1.659
3.468PheVal: 3.468 ± 2.717
0.0PheTrp: 0.0 ± 0.0
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
4.624GlyAla: 4.624 ± 3.317
2.312GlyCys: 2.312 ± 1.811
4.624GlyAsp: 4.624 ± 3.317
4.624GlyGlu: 4.624 ± 0.152
3.468GlyPhe: 3.468 ± 0.753
3.468GlyGly: 3.468 ± 2.488
1.156GlyHis: 1.156 ± 0.906
3.468GlyIle: 3.468 ± 0.753
5.78GlyLys: 5.78 ± 0.677
2.312GlyLeu: 2.312 ± 0.076
1.156GlyMet: 1.156 ± 0.829
2.312GlyAsn: 2.312 ± 0.076
4.624GlyPro: 4.624 ± 3.317
1.156GlyGln: 1.156 ± 0.829
1.156GlyArg: 1.156 ± 0.829
16.185GlySer: 16.185 ± 9.876
3.468GlyThr: 3.468 ± 0.753
2.312GlyVal: 2.312 ± 1.811
3.468GlyTrp: 3.468 ± 0.753
1.156GlyTyr: 1.156 ± 0.906
0.0GlyXaa: 0.0 ± 0.0
His
3.468HisAla: 3.468 ± 0.982
0.0HisCys: 0.0 ± 0.0
3.468HisAsp: 3.468 ± 2.717
2.312HisGlu: 2.312 ± 1.811
1.156HisPhe: 1.156 ± 0.829
2.312HisGly: 2.312 ± 1.811
0.0HisHis: 0.0 ± 0.0
1.156HisIle: 1.156 ± 0.906
0.0HisLys: 0.0 ± 0.0
3.468HisLeu: 3.468 ± 2.717
0.0HisMet: 0.0 ± 0.0
1.156HisAsn: 1.156 ± 0.829
2.312HisPro: 2.312 ± 0.076
0.0HisGln: 0.0 ± 0.0
1.156HisArg: 1.156 ± 0.829
1.156HisSer: 1.156 ± 0.829
1.156HisThr: 1.156 ± 0.906
2.312HisVal: 2.312 ± 0.076
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.624IleAla: 4.624 ± 1.887
1.156IleCys: 1.156 ± 0.906
5.78IleAsp: 5.78 ± 2.793
5.78IleGlu: 5.78 ± 1.058
1.156IlePhe: 1.156 ± 0.829
5.78IleGly: 5.78 ± 2.412
2.312IleHis: 2.312 ± 1.811
6.936IleIle: 6.936 ± 1.964
3.468IleLys: 3.468 ± 0.982
3.468IleLeu: 3.468 ± 0.753
2.312IleMet: 2.312 ± 0.076
3.468IleAsn: 3.468 ± 2.488
8.092IlePro: 8.092 ± 2.336
4.624IleGln: 4.624 ± 1.887
3.468IleArg: 3.468 ± 0.753
1.156IleSer: 1.156 ± 0.829
5.78IleThr: 5.78 ± 2.412
1.156IleVal: 1.156 ± 0.906
1.156IleTrp: 1.156 ± 0.906
1.156IleTyr: 1.156 ± 0.829
0.0IleXaa: 0.0 ± 0.0
Lys
1.156LysAla: 1.156 ± 0.906
1.156LysCys: 1.156 ± 0.906
3.468LysAsp: 3.468 ± 2.717
4.624LysGlu: 4.624 ± 1.887
2.312LysPhe: 2.312 ± 0.076
2.312LysGly: 2.312 ± 1.811
1.156LysHis: 1.156 ± 0.829
1.156LysIle: 1.156 ± 0.829
12.717LysLys: 12.717 ± 6.491
0.0LysLeu: 0.0 ± 0.0
0.0LysMet: 0.0 ± 0.0
2.312LysAsn: 2.312 ± 1.811
5.78LysPro: 5.78 ± 1.058
5.78LysGln: 5.78 ± 1.058
1.156LysArg: 1.156 ± 0.906
5.78LysSer: 5.78 ± 1.058
6.936LysThr: 6.936 ± 0.229
2.312LysVal: 2.312 ± 0.076
1.156LysTrp: 1.156 ± 0.906
5.78LysTyr: 5.78 ± 1.058
0.0LysXaa: 0.0 ± 0.0
Leu
6.936LeuAla: 6.936 ± 1.506
0.0LeuCys: 0.0 ± 0.0
2.312LeuAsp: 2.312 ± 1.811
4.624LeuGlu: 4.624 ± 3.622
1.156LeuPhe: 1.156 ± 0.829
6.936LeuGly: 6.936 ± 3.241
3.468LeuHis: 3.468 ± 0.753
5.78LeuIle: 5.78 ± 0.677
4.624LeuLys: 4.624 ± 1.887
6.936LeuLeu: 6.936 ± 1.964
2.312LeuMet: 2.312 ± 1.811
3.468LeuAsn: 3.468 ± 0.753
2.312LeuPro: 2.312 ± 0.076
0.0LeuGln: 0.0 ± 0.0
0.0LeuArg: 0.0 ± 0.0
3.468LeuSer: 3.468 ± 0.753
3.468LeuThr: 3.468 ± 0.753
4.624LeuVal: 4.624 ± 0.152
2.312LeuTrp: 2.312 ± 1.659
3.468LeuTyr: 3.468 ± 0.753
0.0LeuXaa: 0.0 ± 0.0
Met
1.156MetAla: 1.156 ± 0.906
0.0MetCys: 0.0 ± 0.0
1.156MetAsp: 1.156 ± 0.906
2.312MetGlu: 2.312 ± 0.076
1.156MetPhe: 1.156 ± 0.829
1.156MetGly: 1.156 ± 0.829
0.0MetHis: 0.0 ± 0.0
2.312MetIle: 2.312 ± 0.076
1.156MetLys: 1.156 ± 0.906
1.156MetLeu: 1.156 ± 0.906
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
0.0MetPro: 0.0 ± 0.0
0.0MetGln: 0.0 ± 0.0
3.468MetArg: 3.468 ± 0.753
3.468MetSer: 3.468 ± 0.753
1.156MetThr: 1.156 ± 0.829
1.156MetVal: 1.156 ± 0.829
0.0MetTrp: 0.0 ± 0.0
1.156MetTyr: 1.156 ± 0.906
0.0MetXaa: 0.0 ± 0.0
Asn
4.624AsnAla: 4.624 ± 1.582
0.0AsnCys: 0.0 ± 0.0
0.0AsnAsp: 0.0 ± 0.0
2.312AsnGlu: 2.312 ± 1.811
1.156AsnPhe: 1.156 ± 0.906
4.624AsnGly: 4.624 ± 3.317
1.156AsnHis: 1.156 ± 0.906
1.156AsnIle: 1.156 ± 0.829
2.312AsnLys: 2.312 ± 1.811
3.468AsnLeu: 3.468 ± 2.488
0.0AsnMet: 0.0 ± 0.0
3.468AsnAsn: 3.468 ± 2.488
2.312AsnPro: 2.312 ± 0.076
3.468AsnGln: 3.468 ± 2.488
0.0AsnArg: 0.0 ± 0.0
2.312AsnSer: 2.312 ± 1.659
5.78AsnThr: 5.78 ± 1.058
3.468AsnVal: 3.468 ± 2.488
1.156AsnTrp: 1.156 ± 0.906
2.312AsnTyr: 2.312 ± 0.076
0.0AsnXaa: 0.0 ± 0.0
Pro
6.936ProAla: 6.936 ± 4.976
0.0ProCys: 0.0 ± 0.0
3.468ProAsp: 3.468 ± 2.717
1.156ProGlu: 1.156 ± 0.906
3.468ProPhe: 3.468 ± 2.488
3.468ProGly: 3.468 ± 0.753
2.312ProHis: 2.312 ± 1.811
3.468ProIle: 3.468 ± 2.488
2.312ProLys: 2.312 ± 0.076
4.624ProLeu: 4.624 ± 3.317
1.156ProMet: 1.156 ± 0.829
2.312ProAsn: 2.312 ± 0.076
2.312ProPro: 2.312 ± 0.076
2.312ProGln: 2.312 ± 1.659
2.312ProArg: 2.312 ± 1.811
6.936ProSer: 6.936 ± 3.241
4.624ProThr: 4.624 ± 1.887
2.312ProVal: 2.312 ± 0.076
1.156ProTrp: 1.156 ± 0.829
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.312GlnAla: 2.312 ± 0.076
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
1.156GlnGlu: 1.156 ± 0.906
2.312GlnPhe: 2.312 ± 0.076
3.468GlnGly: 3.468 ± 0.753
0.0GlnHis: 0.0 ± 0.0
8.092GlnIle: 8.092 ± 0.601
2.312GlnLys: 2.312 ± 0.076
2.312GlnLeu: 2.312 ± 1.811
1.156GlnMet: 1.156 ± 0.829
4.624GlnAsn: 4.624 ± 1.582
1.156GlnPro: 1.156 ± 0.906
1.156GlnGln: 1.156 ± 0.829
2.312GlnArg: 2.312 ± 1.811
2.312GlnSer: 2.312 ± 0.076
2.312GlnThr: 2.312 ± 0.076
1.156GlnVal: 1.156 ± 0.829
0.0GlnTrp: 0.0 ± 0.0
1.156GlnTyr: 1.156 ± 0.829
0.0GlnXaa: 0.0 ± 0.0
Arg
0.0ArgAla: 0.0 ± 0.0
0.0ArgCys: 0.0 ± 0.0
1.156ArgAsp: 1.156 ± 0.906
1.156ArgGlu: 1.156 ± 0.829
2.312ArgPhe: 2.312 ± 1.811
0.0ArgGly: 0.0 ± 0.0
2.312ArgHis: 2.312 ± 0.076
1.156ArgIle: 1.156 ± 0.906
2.312ArgLys: 2.312 ± 1.659
4.624ArgLeu: 4.624 ± 3.622
2.312ArgMet: 2.312 ± 0.076
1.156ArgAsn: 1.156 ± 0.829
2.312ArgPro: 2.312 ± 1.659
1.156ArgGln: 1.156 ± 0.906
5.78ArgArg: 5.78 ± 0.677
1.156ArgSer: 1.156 ± 0.906
0.0ArgThr: 0.0 ± 0.0
2.312ArgVal: 2.312 ± 0.076
1.156ArgTrp: 1.156 ± 0.906
3.468ArgTyr: 3.468 ± 2.488
0.0ArgXaa: 0.0 ± 0.0
Ser
13.873SerAla: 13.873 ± 6.482
1.156SerCys: 1.156 ± 0.829
5.78SerAsp: 5.78 ± 2.793
2.312SerGlu: 2.312 ± 0.076
2.312SerPhe: 2.312 ± 0.076
4.624SerGly: 4.624 ± 3.317
2.312SerHis: 2.312 ± 0.076
4.624SerIle: 4.624 ± 1.582
2.312SerLys: 2.312 ± 0.076
8.092SerLeu: 8.092 ± 5.805
2.312SerMet: 2.312 ± 2.105
1.156SerAsn: 1.156 ± 0.906
1.156SerPro: 1.156 ± 0.829
5.78SerGln: 5.78 ± 2.793
2.312SerArg: 2.312 ± 1.811
3.468SerSer: 3.468 ± 0.753
5.78SerThr: 5.78 ± 1.058
3.468SerVal: 3.468 ± 2.488
0.0SerTrp: 0.0 ± 0.0
4.624SerTyr: 4.624 ± 0.152
0.0SerXaa: 0.0 ± 0.0
Thr
3.468ThrAla: 3.468 ± 2.488
1.156ThrCys: 1.156 ± 0.829
2.312ThrAsp: 2.312 ± 0.076
3.468ThrGlu: 3.468 ± 0.753
3.468ThrPhe: 3.468 ± 0.753
10.405ThrGly: 10.405 ± 3.994
2.312ThrHis: 2.312 ± 1.811
9.249ThrIle: 9.249 ± 0.305
2.312ThrLys: 2.312 ± 1.811
0.0ThrLeu: 0.0 ± 0.0
1.156ThrMet: 1.156 ± 0.906
6.936ThrAsn: 6.936 ± 3.241
6.936ThrPro: 6.936 ± 0.229
2.312ThrGln: 2.312 ± 0.076
1.156ThrArg: 1.156 ± 0.906
8.092ThrSer: 8.092 ± 4.604
4.624ThrThr: 4.624 ± 1.582
1.156ThrVal: 1.156 ± 0.829
0.0ThrTrp: 0.0 ± 0.0
3.468ThrTyr: 3.468 ± 0.753
0.0ThrXaa: 0.0 ± 0.0
Val
3.468ValAla: 3.468 ± 0.753
1.156ValCys: 1.156 ± 0.906
5.78ValAsp: 5.78 ± 1.058
0.0ValGlu: 0.0 ± 0.0
5.78ValPhe: 5.78 ± 1.058
4.624ValGly: 4.624 ± 1.582
0.0ValHis: 0.0 ± 0.0
2.312ValIle: 2.312 ± 0.076
3.468ValLys: 3.468 ± 0.982
4.624ValLeu: 4.624 ± 1.582
0.0ValMet: 0.0 ± 0.0
1.156ValAsn: 1.156 ± 0.829
1.156ValPro: 1.156 ± 0.829
0.0ValGln: 0.0 ± 0.0
1.156ValArg: 1.156 ± 0.829
3.468ValSer: 3.468 ± 0.982
4.624ValThr: 4.624 ± 1.582
4.624ValVal: 4.624 ± 0.152
1.156ValTrp: 1.156 ± 0.906
1.156ValTyr: 1.156 ± 0.906
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
1.156TrpAsp: 1.156 ± 0.906
2.312TrpGlu: 2.312 ± 1.811
2.312TrpPhe: 2.312 ± 1.811
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.156TrpLeu: 1.156 ± 0.829
0.0TrpMet: 0.0 ± 0.0
1.156TrpAsn: 1.156 ± 0.829
0.0TrpPro: 0.0 ± 0.0
1.156TrpGln: 1.156 ± 0.906
0.0TrpArg: 0.0 ± 0.0
2.312TrpSer: 2.312 ± 0.076
1.156TrpThr: 1.156 ± 0.829
2.312TrpVal: 2.312 ± 0.076
1.156TrpTrp: 1.156 ± 0.829
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.156TyrAla: 1.156 ± 0.829
0.0TyrCys: 0.0 ± 0.0
4.624TyrAsp: 4.624 ± 1.887
0.0TyrGlu: 0.0 ± 0.0
1.156TyrPhe: 1.156 ± 0.829
1.156TyrGly: 1.156 ± 0.906
2.312TyrHis: 2.312 ± 0.076
4.624TyrIle: 4.624 ± 1.887
2.312TyrLys: 2.312 ± 0.076
2.312TyrLeu: 2.312 ± 0.076
2.312TyrMet: 2.312 ± 0.076
1.156TyrAsn: 1.156 ± 0.829
1.156TyrPro: 1.156 ± 0.829
4.624TyrGln: 4.624 ± 0.152
2.312TyrArg: 2.312 ± 1.659
3.468TyrSer: 3.468 ± 0.753
1.156TyrThr: 1.156 ± 0.906
2.312TyrVal: 2.312 ± 1.659
0.0TyrTrp: 0.0 ± 0.0
1.156TyrTyr: 1.156 ± 0.829
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (866 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski