Amino acid dipepetide frequency for Arboretum almendravirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
0.287AlaAla: 0.287 ± 0.378
0.0AlaCys: 0.0 ± 0.0
1.723AlaAsp: 1.723 ± 0.902
1.436AlaGlu: 1.436 ± 0.975
1.148AlaPhe: 1.148 ± 0.371
0.287AlaGly: 0.287 ± 0.15
0.861AlaHis: 0.861 ± 0.286
2.871AlaIle: 2.871 ± 1.147
1.723AlaLys: 1.723 ± 0.735
4.594AlaLeu: 4.594 ± 0.945
0.287AlaMet: 0.287 ± 0.378
2.297AlaAsn: 2.297 ± 0.426
0.0AlaPro: 0.0 ± 0.0
0.861AlaGln: 0.861 ± 0.677
1.723AlaArg: 1.723 ± 0.584
2.871AlaSer: 2.871 ± 0.609
1.148AlaThr: 1.148 ± 0.736
1.148AlaVal: 1.148 ± 0.736
0.0AlaTrp: 0.0 ± 0.0
1.148AlaTyr: 1.148 ± 0.364
0.0AlaXaa: 0.0 ± 0.0
Cys
1.148CysAla: 1.148 ± 1.05
0.0CysCys: 0.0 ± 0.0
0.574CysAsp: 0.574 ± 0.351
0.287CysGlu: 0.287 ± 0.471
1.148CysPhe: 1.148 ± 0.435
0.861CysGly: 0.861 ± 0.431
0.287CysHis: 0.287 ± 0.414
1.436CysIle: 1.436 ± 0.521
0.574CysLys: 0.574 ± 0.276
1.723CysLeu: 1.723 ± 0.609
0.287CysMet: 0.287 ± 0.37
0.861CysAsn: 0.861 ± 0.407
0.574CysPro: 0.574 ± 0.679
0.287CysGln: 0.287 ± 0.15
0.861CysArg: 0.861 ± 0.431
1.148CysSer: 1.148 ± 0.358
0.287CysThr: 0.287 ± 0.34
0.861CysVal: 0.861 ± 0.431
0.574CysTrp: 0.574 ± 0.301
0.861CysTyr: 0.861 ± 0.6
0.0CysXaa: 0.0 ± 0.0
Asp
0.574AspAla: 0.574 ± 0.308
0.861AspCys: 0.861 ± 0.55
5.742AspAsp: 5.742 ± 0.592
4.594AspGlu: 4.594 ± 0.835
2.584AspPhe: 2.584 ± 0.769
2.01AspGly: 2.01 ± 0.687
0.861AspHis: 0.861 ± 0.451
7.752AspIle: 7.752 ± 2.477
6.604AspLys: 6.604 ± 1.287
7.178AspLeu: 7.178 ± 2.866
2.584AspMet: 2.584 ± 1.427
4.02AspAsn: 4.02 ± 0.709
2.297AspPro: 2.297 ± 0.67
3.158AspGln: 3.158 ± 0.767
3.158AspArg: 3.158 ± 0.6
4.881AspSer: 4.881 ± 0.579
1.436AspThr: 1.436 ± 0.592
1.723AspVal: 1.723 ± 0.553
0.861AspTrp: 0.861 ± 0.673
2.584AspTyr: 2.584 ± 1.049
0.0AspXaa: 0.0 ± 0.0
Glu
1.148GluAla: 1.148 ± 0.492
1.148GluCys: 1.148 ± 0.435
4.307GluAsp: 4.307 ± 1.006
3.445GluGlu: 3.445 ± 1.728
2.01GluPhe: 2.01 ± 0.656
2.01GluGly: 2.01 ± 0.457
0.287GluHis: 0.287 ± 0.15
5.742GluIle: 5.742 ± 1.045
5.168GluLys: 5.168 ± 0.674
8.613GluLeu: 8.613 ± 0.915
0.574GluMet: 0.574 ± 0.756
3.445GluAsn: 3.445 ± 1.47
2.297GluPro: 2.297 ± 0.857
0.861GluGln: 0.861 ± 0.286
2.01GluArg: 2.01 ± 1.052
5.455GluSer: 5.455 ± 0.7
3.732GluThr: 3.732 ± 0.762
4.881GluVal: 4.881 ± 1.061
0.574GluTrp: 0.574 ± 0.301
4.594GluTyr: 4.594 ± 0.728
0.0GluXaa: 0.0 ± 0.0
Phe
0.861PheAla: 0.861 ± 0.303
0.861PheCys: 0.861 ± 0.451
2.584PheAsp: 2.584 ± 0.575
4.02PheGlu: 4.02 ± 1.111
2.01PhePhe: 2.01 ± 0.419
2.871PheGly: 2.871 ± 0.661
0.574PheHis: 0.574 ± 0.428
4.02PheIle: 4.02 ± 0.758
4.307PheLys: 4.307 ± 1.186
3.158PheLeu: 3.158 ± 1.292
0.861PheMet: 0.861 ± 0.286
3.732PheAsn: 3.732 ± 0.437
2.297PhePro: 2.297 ± 0.346
0.574PheGln: 0.574 ± 0.276
2.297PheArg: 2.297 ± 0.649
3.158PheSer: 3.158 ± 0.664
2.871PheThr: 2.871 ± 0.495
3.158PheVal: 3.158 ± 1.368
0.287PheTrp: 0.287 ± 0.15
2.01PheTyr: 2.01 ± 0.902
0.0PheXaa: 0.0 ± 0.0
Gly
1.436GlyAla: 1.436 ± 0.592
0.287GlyCys: 0.287 ± 0.471
2.297GlyAsp: 2.297 ± 0.203
2.297GlyGlu: 2.297 ± 0.636
1.436GlyPhe: 1.436 ± 0.752
2.584GlyGly: 2.584 ± 0.58
1.148GlyHis: 1.148 ± 0.601
3.445GlyIle: 3.445 ± 0.842
2.871GlyLys: 2.871 ± 1.072
5.742GlyLeu: 5.742 ± 1.911
1.436GlyMet: 1.436 ± 0.471
3.732GlyAsn: 3.732 ± 0.972
0.287GlyPro: 0.287 ± 0.15
1.148GlyGln: 1.148 ± 0.367
2.01GlyArg: 2.01 ± 0.457
4.02GlySer: 4.02 ± 0.618
1.436GlyThr: 1.436 ± 0.716
1.723GlyVal: 1.723 ± 0.374
0.574GlyTrp: 0.574 ± 0.301
2.871GlyTyr: 2.871 ± 0.85
0.0GlyXaa: 0.0 ± 0.0
His
0.861HisAla: 0.861 ± 0.303
0.0HisCys: 0.0 ± 0.0
1.148HisAsp: 1.148 ± 0.435
0.574HisGlu: 0.574 ± 0.343
0.574HisPhe: 0.574 ± 0.308
0.861HisGly: 0.861 ± 0.303
0.861HisHis: 0.861 ± 0.451
2.01HisIle: 2.01 ± 0.637
2.01HisLys: 2.01 ± 0.567
1.148HisLeu: 1.148 ± 0.435
0.861HisMet: 0.861 ± 0.303
1.723HisAsn: 1.723 ± 0.562
0.861HisPro: 0.861 ± 0.286
1.436HisGln: 1.436 ± 0.752
0.287HisArg: 0.287 ± 0.15
2.297HisSer: 2.297 ± 0.772
0.287HisThr: 0.287 ± 0.15
0.861HisVal: 0.861 ± 0.286
0.574HisTrp: 0.574 ± 0.343
1.436HisTyr: 1.436 ± 0.339
0.0HisXaa: 0.0 ± 0.0
Ile
2.584IleAla: 2.584 ± 0.56
1.436IleCys: 1.436 ± 0.637
6.891IleAsp: 6.891 ± 1.069
4.594IleGlu: 4.594 ± 0.806
4.02IlePhe: 4.02 ± 0.614
4.881IleGly: 4.881 ± 1.215
2.01IleHis: 2.01 ± 0.472
8.613IleIle: 8.613 ± 1.065
6.604IleLys: 6.604 ± 0.872
7.752IleLeu: 7.752 ± 1.116
2.01IleMet: 2.01 ± 0.817
7.752IleAsn: 7.752 ± 0.717
2.297IlePro: 2.297 ± 0.481
1.148IleGln: 1.148 ± 0.609
4.02IleArg: 4.02 ± 0.663
7.178IleSer: 7.178 ± 1.129
5.742IleThr: 5.742 ± 0.721
4.307IleVal: 4.307 ± 0.799
0.287IleTrp: 0.287 ± 0.406
5.168IleTyr: 5.168 ± 1.008
0.0IleXaa: 0.0 ± 0.0
Lys
2.01LysAla: 2.01 ± 0.457
2.01LysCys: 2.01 ± 1.102
5.455LysAsp: 5.455 ± 0.94
6.029LysGlu: 6.029 ± 0.685
3.445LysPhe: 3.445 ± 0.545
2.871LysGly: 2.871 ± 1.042
2.871LysHis: 2.871 ± 0.6
7.178LysIle: 7.178 ± 1.877
6.029LysLys: 6.029 ± 1.195
8.039LysLeu: 8.039 ± 3.471
3.732LysMet: 3.732 ± 0.455
5.455LysAsn: 5.455 ± 0.74
1.436LysPro: 1.436 ± 0.6
1.723LysGln: 1.723 ± 0.735
2.871LysArg: 2.871 ± 0.899
5.742LysSer: 5.742 ± 1.229
5.455LysThr: 5.455 ± 1.664
4.02LysVal: 4.02 ± 0.932
0.574LysTrp: 0.574 ± 0.343
5.455LysTyr: 5.455 ± 0.45
0.0LysXaa: 0.0 ± 0.0
Leu
1.723LeuAla: 1.723 ± 0.949
1.436LeuCys: 1.436 ± 0.541
6.604LeuAsp: 6.604 ± 1.278
7.752LeuGlu: 7.752 ± 0.795
5.455LeuPhe: 5.455 ± 1.761
4.594LeuGly: 4.594 ± 0.945
2.01LeuHis: 2.01 ± 0.695
6.891LeuIle: 6.891 ± 1.165
8.039LeuLys: 8.039 ± 1.005
9.475LeuLeu: 9.475 ± 1.347
2.871LeuMet: 2.871 ± 0.797
6.029LeuAsn: 6.029 ± 1.075
4.02LeuPro: 4.02 ± 0.826
2.871LeuGln: 2.871 ± 0.525
6.891LeuArg: 6.891 ± 1.002
6.604LeuSer: 6.604 ± 1.027
5.455LeuThr: 5.455 ± 0.803
4.594LeuVal: 4.594 ± 0.283
0.861LeuTrp: 0.861 ± 0.451
4.02LeuTyr: 4.02 ± 1.157
0.0LeuXaa: 0.0 ± 0.0
Met
1.436MetAla: 1.436 ± 0.592
0.287MetCys: 0.287 ± 0.471
2.01MetAsp: 2.01 ± 0.563
1.148MetGlu: 1.148 ± 0.371
1.723MetPhe: 1.723 ± 0.269
1.148MetGly: 1.148 ± 0.318
0.0MetHis: 0.0 ± 0.0
2.01MetIle: 2.01 ± 0.561
1.436MetLys: 1.436 ± 0.541
2.01MetLeu: 2.01 ± 0.695
0.861MetMet: 0.861 ± 0.286
2.584MetAsn: 2.584 ± 0.849
0.861MetPro: 0.861 ± 0.673
0.574MetGln: 0.574 ± 0.525
1.436MetArg: 1.436 ± 0.648
1.723MetSer: 1.723 ± 0.374
1.148MetThr: 1.148 ± 0.533
1.723MetVal: 1.723 ± 1.192
0.287MetTrp: 0.287 ± 0.15
1.148MetTyr: 1.148 ± 0.51
0.0MetXaa: 0.0 ± 0.0
Asn
1.148AsnAla: 1.148 ± 0.358
0.861AsnCys: 0.861 ± 0.286
4.307AsnAsp: 4.307 ± 1.347
2.871AsnGlu: 2.871 ± 0.495
4.02AsnPhe: 4.02 ± 0.712
2.297AsnGly: 2.297 ± 0.521
2.297AsnHis: 2.297 ± 0.481
8.9AsnIle: 8.9 ± 2.856
5.742AsnLys: 5.742 ± 1.291
8.039AsnLeu: 8.039 ± 0.855
0.574AsnMet: 0.574 ± 0.538
7.752AsnAsn: 7.752 ± 1.016
3.732AsnPro: 3.732 ± 1.013
1.723AsnGln: 1.723 ± 0.513
3.158AsnArg: 3.158 ± 1.325
6.029AsnSer: 6.029 ± 0.948
5.168AsnThr: 5.168 ± 0.695
4.307AsnVal: 4.307 ± 1.01
1.436AsnTrp: 1.436 ± 0.478
4.02AsnTyr: 4.02 ± 1.264
0.0AsnXaa: 0.0 ± 0.0
Pro
1.148ProAla: 1.148 ± 0.593
0.574ProCys: 0.574 ± 0.351
2.01ProAsp: 2.01 ± 0.715
1.723ProGlu: 1.723 ± 0.902
1.148ProPhe: 1.148 ± 0.616
1.436ProGly: 1.436 ± 0.478
0.861ProHis: 0.861 ± 0.436
3.445ProIle: 3.445 ± 0.545
1.723ProLys: 1.723 ± 0.735
2.297ProLeu: 2.297 ± 0.716
0.861ProMet: 0.861 ± 0.303
2.584ProAsn: 2.584 ± 0.695
1.723ProPro: 1.723 ± 0.627
0.861ProGln: 0.861 ± 0.303
2.01ProArg: 2.01 ± 0.529
2.01ProSer: 2.01 ± 0.52
2.584ProThr: 2.584 ± 0.933
2.01ProVal: 2.01 ± 0.629
0.287ProTrp: 0.287 ± 0.15
1.148ProTyr: 1.148 ± 0.367
0.0ProXaa: 0.0 ± 0.0
Gln
1.723GlnAla: 1.723 ± 0.606
0.287GlnCys: 0.287 ± 0.15
1.436GlnAsp: 1.436 ± 0.599
1.723GlnGlu: 1.723 ± 0.509
1.723GlnPhe: 1.723 ± 0.59
0.574GlnGly: 0.574 ± 0.301
0.574GlnHis: 0.574 ± 0.276
2.584GlnIle: 2.584 ± 0.789
2.01GlnLys: 2.01 ± 0.422
2.584GlnLeu: 2.584 ± 0.814
0.287GlnMet: 0.287 ± 0.471
1.436GlnAsn: 1.436 ± 0.475
1.148GlnPro: 1.148 ± 0.364
0.0GlnGln: 0.0 ± 0.0
1.436GlnArg: 1.436 ± 0.924
2.297GlnSer: 2.297 ± 0.636
0.0GlnThr: 0.0 ± 0.0
2.584GlnVal: 2.584 ± 0.681
0.574GlnTrp: 0.574 ± 0.276
1.148GlnTyr: 1.148 ± 0.533
0.0GlnXaa: 0.0 ± 0.0
Arg
1.148ArgAla: 1.148 ± 0.42
0.861ArgCys: 0.861 ± 0.286
3.445ArgAsp: 3.445 ± 0.807
4.594ArgGlu: 4.594 ± 0.887
3.445ArgPhe: 3.445 ± 1.472
2.584ArgGly: 2.584 ± 0.58
0.287ArgHis: 0.287 ± 0.15
2.297ArgIle: 2.297 ± 0.48
4.307ArgLys: 4.307 ± 1.013
4.02ArgLeu: 4.02 ± 1.133
1.148ArgMet: 1.148 ± 0.703
4.02ArgAsn: 4.02 ± 0.809
0.861ArgPro: 0.861 ± 0.451
2.01ArgGln: 2.01 ± 0.529
2.871ArgArg: 2.871 ± 0.608
3.158ArgSer: 3.158 ± 1.133
0.861ArgThr: 0.861 ± 0.451
2.871ArgVal: 2.871 ± 0.899
0.861ArgTrp: 0.861 ± 0.451
3.445ArgTyr: 3.445 ± 0.885
0.0ArgXaa: 0.0 ± 0.0
Ser
2.871SerAla: 2.871 ± 0.353
1.148SerCys: 1.148 ± 0.791
4.594SerAsp: 4.594 ± 0.83
2.871SerGlu: 2.871 ± 1.206
4.307SerPhe: 4.307 ± 1.058
3.445SerGly: 3.445 ± 0.626
1.723SerHis: 1.723 ± 0.465
5.742SerIle: 5.742 ± 1.097
7.465SerLys: 7.465 ± 1.805
5.455SerLeu: 5.455 ± 0.876
2.01SerMet: 2.01 ± 0.757
7.752SerAsn: 7.752 ± 0.688
2.584SerPro: 2.584 ± 0.806
2.01SerGln: 2.01 ± 1.142
4.02SerArg: 4.02 ± 1.056
5.168SerSer: 5.168 ± 1.072
3.158SerThr: 3.158 ± 0.627
4.594SerVal: 4.594 ± 1.533
0.574SerTrp: 0.574 ± 0.756
3.732SerTyr: 3.732 ± 0.895
0.0SerXaa: 0.0 ± 0.0
Thr
1.436ThrAla: 1.436 ± 0.471
0.574ThrCys: 0.574 ± 0.276
3.445ThrAsp: 3.445 ± 0.748
3.158ThrGlu: 3.158 ± 0.506
2.297ThrPhe: 2.297 ± 1.43
2.871ThrGly: 2.871 ± 1.293
0.574ThrHis: 0.574 ± 0.308
2.871ThrIle: 2.871 ± 0.822
4.02ThrLys: 4.02 ± 0.949
4.881ThrLeu: 4.881 ± 0.777
0.574ThrMet: 0.574 ± 0.308
4.594ThrAsn: 4.594 ± 0.669
2.297ThrPro: 2.297 ± 0.802
0.861ThrGln: 0.861 ± 0.407
2.871ThrArg: 2.871 ± 0.757
2.871ThrSer: 2.871 ± 0.918
2.297ThrThr: 2.297 ± 0.569
2.297ThrVal: 2.297 ± 1.797
1.436ThrTrp: 1.436 ± 0.583
2.01ThrTyr: 2.01 ± 0.332
0.0ThrXaa: 0.0 ± 0.0
Val
0.861ValAla: 0.861 ± 0.431
1.436ValCys: 1.436 ± 0.599
2.297ValAsp: 2.297 ± 0.539
4.02ValGlu: 4.02 ± 1.253
2.297ValPhe: 2.297 ± 0.745
3.158ValGly: 3.158 ± 0.81
0.574ValHis: 0.574 ± 0.308
5.742ValIle: 5.742 ± 0.596
5.742ValLys: 5.742 ± 0.947
3.732ValLeu: 3.732 ± 0.378
2.01ValMet: 2.01 ± 0.85
3.158ValAsn: 3.158 ± 0.595
1.148ValPro: 1.148 ± 0.367
1.723ValGln: 1.723 ± 0.596
2.297ValArg: 2.297 ± 0.984
3.732ValSer: 3.732 ± 1.642
2.01ValThr: 2.01 ± 0.561
1.436ValVal: 1.436 ± 0.583
0.574ValTrp: 0.574 ± 0.308
3.445ValTyr: 3.445 ± 0.868
0.0ValXaa: 0.0 ± 0.0
Trp
0.574TrpAla: 0.574 ± 0.756
0.0TrpCys: 0.0 ± 0.0
1.436TrpAsp: 1.436 ± 0.521
1.436TrpGlu: 1.436 ± 0.752
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.287TrpHis: 0.287 ± 0.15
1.148TrpIle: 1.148 ± 0.364
1.436TrpLys: 1.436 ± 0.568
1.723TrpLeu: 1.723 ± 0.606
0.287TrpMet: 0.287 ± 0.154
1.148TrpAsn: 1.148 ± 0.601
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.861TrpSer: 0.861 ± 0.286
0.861TrpThr: 0.861 ± 0.436
0.861TrpVal: 0.861 ± 0.51
0.0TrpTrp: 0.0 ± 0.0
0.287TrpTyr: 0.287 ± 0.15
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.436TyrAla: 1.436 ± 0.928
0.574TyrCys: 0.574 ± 0.679
3.158TyrAsp: 3.158 ± 0.924
3.732TyrGlu: 3.732 ± 1.914
1.723TyrPhe: 1.723 ± 0.596
1.436TyrGly: 1.436 ± 0.856
1.723TyrHis: 1.723 ± 0.327
4.594TyrIle: 4.594 ± 0.92
4.881TyrLys: 4.881 ± 1.007
6.029TyrLeu: 6.029 ± 0.685
1.148TyrMet: 1.148 ± 0.308
4.307TyrAsn: 4.307 ± 1.249
1.723TyrPro: 1.723 ± 0.584
2.297TyrGln: 2.297 ± 1.504
2.871TyrArg: 2.871 ± 0.378
4.02TyrSer: 4.02 ± 1.096
2.297TyrThr: 2.297 ± 0.733
1.436TyrVal: 1.436 ± 0.436
1.148TyrTrp: 1.148 ± 0.551
2.01TyrTyr: 2.01 ± 0.472
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (3484 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski