Capybara microvirus Cap3_SP_333

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W563|A0A4P8W563_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_333 OX=2585431 PE=4 SV=1
MM1 pKa = 7.53IIFYY5 pKa = 10.69VFLHH9 pKa = 5.99IKK11 pKa = 9.54IFNAMLFYY19 pKa = 11.11KK20 pKa = 10.34LFIEE24 pKa = 5.89FSSQTDD30 pKa = 3.67SFNEE34 pKa = 4.18EE35 pKa = 3.75YY36 pKa = 10.71DD37 pKa = 3.61FSSFEE42 pKa = 4.04DD43 pKa = 3.57AVAYY47 pKa = 10.6LSDD50 pKa = 3.61IASHH54 pKa = 6.9FLITNVKK61 pKa = 8.9IDD63 pKa = 3.81SYY65 pKa = 11.88YY66 pKa = 10.99EE67 pKa = 3.88DD68 pKa = 3.57

Molecular weight: 8.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8D2|A0A4P8W8D2_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_333 OX=2585431 PE=4 SV=1
MM1 pKa = 6.81EE2 pKa = 5.94TINKK6 pKa = 8.92FLDD9 pKa = 3.35WLRR12 pKa = 11.84GLPIWVRR19 pKa = 11.84AVACLLAAAAIFLISLQSCSSVRR42 pKa = 11.84VVGNTADD49 pKa = 3.16SRR51 pKa = 11.84VTVRR55 pKa = 11.84QSALDD60 pKa = 3.54STRR63 pKa = 11.84ITIDD67 pKa = 2.97VLPNFNVNKK76 pKa = 10.46

Molecular weight: 8.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1902

68

661

271.7

30.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.204 ± 1.216

1.577 ± 0.472

6.94 ± 0.402

4.154 ± 0.481

6.625 ± 1.01

5.205 ± 0.59

2.05 ± 0.695

5.994 ± 0.247

4.469 ± 0.334

9.464 ± 0.598

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.788 ± 0.131

4.837 ± 0.598

3.785 ± 0.741

5.363 ± 1.398

5.1 ± 0.513

9.937 ± 0.544

4.732 ± 0.288

5.678 ± 0.294

1.262 ± 0.168

4.837 ± 0.57
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski