Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_333

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.891AlaAla: 7.891 ± 3.57
1.052AlaCys: 1.052 ± 0.883
3.682AlaAsp: 3.682 ± 1.528
2.104AlaGlu: 2.104 ± 1.235
3.156AlaPhe: 3.156 ± 0.918
4.208AlaGly: 4.208 ± 1.375
0.526AlaHis: 0.526 ± 0.495
4.734AlaIle: 4.734 ± 0.925
1.578AlaLys: 1.578 ± 0.913
7.891AlaLeu: 7.891 ± 2.566
0.526AlaMet: 0.526 ± 0.709
1.578AlaAsn: 1.578 ± 0.783
1.578AlaPro: 1.578 ± 0.818
3.682AlaGln: 3.682 ± 3.348
3.156AlaArg: 3.156 ± 1.816
6.839AlaSer: 6.839 ± 1.679
0.526AlaThr: 0.526 ± 0.8
4.208AlaVal: 4.208 ± 1.092
0.0AlaTrp: 0.0 ± 0.0
3.156AlaTyr: 3.156 ± 1.17
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.526CysCys: 0.526 ± 0.4
2.104CysAsp: 2.104 ± 1.381
1.052CysGlu: 1.052 ± 0.893
1.052CysPhe: 1.052 ± 0.534
1.578CysGly: 1.578 ± 0.913
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.526CysLys: 0.526 ± 0.478
2.104CysLeu: 2.104 ± 1.176
0.526CysMet: 0.526 ± 0.4
0.526CysAsn: 0.526 ± 0.4
0.526CysPro: 0.526 ± 0.4
0.526CysGln: 0.526 ± 0.8
1.578CysArg: 1.578 ± 1.385
1.052CysSer: 1.052 ± 0.752
1.052CysThr: 1.052 ± 0.502
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.052CysTyr: 1.052 ± 0.502
0.0CysXaa: 0.0 ± 0.0
Asp
5.26AspAla: 5.26 ± 2.598
1.052AspCys: 1.052 ± 1.024
2.104AspAsp: 2.104 ± 0.395
4.734AspGlu: 4.734 ± 3.209
3.156AspPhe: 3.156 ± 1.364
4.734AspGly: 4.734 ± 0.936
0.526AspHis: 0.526 ± 0.4
5.786AspIle: 5.786 ± 1.853
1.578AspLys: 1.578 ± 0.864
5.26AspLeu: 5.26 ± 2.05
2.104AspMet: 2.104 ± 0.933
2.63AspAsn: 2.63 ± 1.392
1.052AspPro: 1.052 ± 0.8
2.104AspGln: 2.104 ± 1.235
4.208AspArg: 4.208 ± 0.789
8.417AspSer: 8.417 ± 1.988
3.156AspThr: 3.156 ± 2.234
4.208AspVal: 4.208 ± 1.279
1.578AspTrp: 1.578 ± 0.685
5.786AspTyr: 5.786 ± 1.573
0.0AspXaa: 0.0 ± 0.0
Glu
2.63GluAla: 2.63 ± 1.775
0.526GluCys: 0.526 ± 0.495
4.208GluAsp: 4.208 ± 1.742
1.052GluGlu: 1.052 ± 0.824
4.208GluPhe: 4.208 ± 1.277
0.526GluGly: 0.526 ± 0.4
1.052GluHis: 1.052 ± 0.397
3.682GluIle: 3.682 ± 0.782
0.0GluLys: 0.0 ± 0.0
4.734GluLeu: 4.734 ± 1.643
2.104GluMet: 2.104 ± 1.213
0.526GluAsn: 0.526 ± 0.4
1.052GluPro: 1.052 ± 0.795
3.682GluGln: 3.682 ± 2.711
0.526GluArg: 0.526 ± 0.478
4.734GluSer: 4.734 ± 0.936
1.578GluThr: 1.578 ± 0.685
0.0GluVal: 0.0 ± 0.0
0.526GluTrp: 0.526 ± 0.495
3.682GluTyr: 3.682 ± 1.273
0.0GluXaa: 0.0 ± 0.0
Phe
3.682PheAla: 3.682 ± 0.522
1.052PheCys: 1.052 ± 0.991
5.26PheAsp: 5.26 ± 0.72
3.156PheGlu: 3.156 ± 1.316
3.156PhePhe: 3.156 ± 2.35
5.26PheGly: 5.26 ± 1.17
2.104PheHis: 2.104 ± 1.003
4.208PheIle: 4.208 ± 1.796
4.734PheLys: 4.734 ± 0.952
6.839PheLeu: 6.839 ± 2.256
1.052PheMet: 1.052 ± 0.8
3.682PheAsn: 3.682 ± 1.472
1.052PhePro: 1.052 ± 0.912
2.104PheGln: 2.104 ± 1.154
2.63PheArg: 2.63 ± 0.629
5.26PheSer: 5.26 ± 2.247
3.156PheThr: 3.156 ± 1.275
4.208PheVal: 4.208 ± 1.169
1.578PheTrp: 1.578 ± 0.246
2.104PheTyr: 2.104 ± 1.471
0.0PheXaa: 0.0 ± 0.0
Gly
2.63GlyAla: 2.63 ± 2.391
1.578GlyCys: 1.578 ± 1.2
2.63GlyAsp: 2.63 ± 0.984
1.578GlyGlu: 1.578 ± 0.818
2.104GlyPhe: 2.104 ± 0.794
1.052GlyGly: 1.052 ± 0.912
0.526GlyHis: 0.526 ± 0.4
4.208GlyIle: 4.208 ± 1.874
1.052GlyLys: 1.052 ± 0.795
3.682GlyLeu: 3.682 ± 1.6
0.0GlyMet: 0.0 ± 0.0
3.682GlyAsn: 3.682 ± 1.232
2.104GlyPro: 2.104 ± 1.003
4.208GlyGln: 4.208 ± 1.542
1.052GlyArg: 1.052 ± 0.502
6.312GlySer: 6.312 ± 1.621
4.208GlyThr: 4.208 ± 1.375
5.26GlyVal: 5.26 ± 2.018
0.0GlyTrp: 0.0 ± 0.0
4.208GlyTyr: 4.208 ± 1.517
0.0GlyXaa: 0.0 ± 0.0
His
0.526HisAla: 0.526 ± 0.495
0.526HisCys: 0.526 ± 0.4
3.156HisAsp: 3.156 ± 1.727
0.526HisGlu: 0.526 ± 0.4
1.052HisPhe: 1.052 ± 1.132
1.578HisGly: 1.578 ± 0.76
0.0HisHis: 0.0 ± 0.0
0.526HisIle: 0.526 ± 0.709
0.526HisLys: 0.526 ± 0.495
2.104HisLeu: 2.104 ± 1.003
1.052HisMet: 1.052 ± 0.991
1.052HisAsn: 1.052 ± 0.502
1.052HisPro: 1.052 ± 0.502
0.526HisGln: 0.526 ± 0.495
1.052HisArg: 1.052 ± 0.502
1.578HisSer: 1.578 ± 0.246
1.052HisThr: 1.052 ± 0.397
0.526HisVal: 0.526 ± 0.4
0.526HisTrp: 0.526 ± 0.495
1.578HisTyr: 1.578 ± 1.486
0.0HisXaa: 0.0 ± 0.0
Ile
2.63IleAla: 2.63 ± 0.885
1.052IleCys: 1.052 ± 0.8
6.312IleAsp: 6.312 ± 1.394
3.682IleGlu: 3.682 ± 1.158
6.312IlePhe: 6.312 ± 1.566
2.63IleGly: 2.63 ± 1.025
2.104IleHis: 2.104 ± 1.003
0.526IleIle: 0.526 ± 0.709
4.208IleLys: 4.208 ± 0.89
5.26IleLeu: 5.26 ± 0.993
1.052IleMet: 1.052 ± 0.397
4.208IleAsn: 4.208 ± 1.278
3.682IlePro: 3.682 ± 1.532
1.578IleGln: 1.578 ± 0.818
1.578IleArg: 1.578 ± 0.638
5.26IleSer: 5.26 ± 1.597
3.682IleThr: 3.682 ± 0.763
1.578IleVal: 1.578 ± 1.486
1.578IleTrp: 1.578 ± 1.025
1.052IleTyr: 1.052 ± 0.893
0.0IleXaa: 0.0 ± 0.0
Lys
3.156LysAla: 3.156 ± 1.919
0.0LysCys: 0.0 ± 0.0
2.63LysAsp: 2.63 ± 1.48
0.0LysGlu: 0.0 ± 0.0
4.208LysPhe: 4.208 ± 1.234
1.052LysGly: 1.052 ± 0.534
0.526LysHis: 0.526 ± 0.495
4.208LysIle: 4.208 ± 1.742
0.0LysLys: 0.0 ± 0.0
5.26LysLeu: 5.26 ± 0.997
1.052LysMet: 1.052 ± 1.07
2.104LysAsn: 2.104 ± 0.794
2.104LysPro: 2.104 ± 0.755
3.682LysGln: 3.682 ± 1.219
3.682LysArg: 3.682 ± 2.55
3.156LysSer: 3.156 ± 1.275
2.104LysThr: 2.104 ± 0.572
3.682LysVal: 3.682 ± 1.177
0.526LysTrp: 0.526 ± 0.478
1.578LysTyr: 1.578 ± 0.913
0.0LysXaa: 0.0 ± 0.0
Leu
3.156LeuAla: 3.156 ± 1.174
0.526LeuCys: 0.526 ± 0.478
6.312LeuAsp: 6.312 ± 1.683
2.104LeuGlu: 2.104 ± 1.069
5.786LeuPhe: 5.786 ± 1.503
7.891LeuGly: 7.891 ± 1.316
2.63LeuHis: 2.63 ± 1.337
7.365LeuIle: 7.365 ± 1.125
6.312LeuLys: 6.312 ± 1.225
6.839LeuLeu: 6.839 ± 2.091
1.052LeuMet: 1.052 ± 0.534
6.312LeuAsn: 6.312 ± 0.947
5.26LeuPro: 5.26 ± 1.342
4.734LeuGln: 4.734 ± 3.164
6.312LeuArg: 6.312 ± 1.0
9.469LeuSer: 9.469 ± 3.154
5.26LeuThr: 5.26 ± 1.198
3.682LeuVal: 3.682 ± 0.798
0.526LeuTrp: 0.526 ± 0.4
3.156LeuTyr: 3.156 ± 0.811
0.0LeuXaa: 0.0 ± 0.0
Met
2.104MetAla: 2.104 ± 0.794
0.0MetCys: 0.0 ± 0.0
1.052MetAsp: 1.052 ± 0.8
0.526MetGlu: 0.526 ± 0.68
0.526MetPhe: 0.526 ± 0.495
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
2.63MetIle: 2.63 ± 0.677
1.578MetLys: 1.578 ± 0.908
2.104MetLeu: 2.104 ± 0.966
0.526MetMet: 0.526 ± 0.375
0.0MetAsn: 0.0 ± 0.0
1.052MetPro: 1.052 ± 0.397
0.526MetGln: 0.526 ± 0.4
0.0MetArg: 0.0 ± 0.0
3.156MetSer: 3.156 ± 1.287
1.052MetThr: 1.052 ± 0.912
0.526MetVal: 0.526 ± 0.478
0.526MetTrp: 0.526 ± 0.4
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
6.312AsnAla: 6.312 ± 1.681
1.052AsnCys: 1.052 ± 0.502
2.63AsnAsp: 2.63 ± 0.756
3.156AsnGlu: 3.156 ± 1.0
3.156AsnPhe: 3.156 ± 1.58
1.578AsnGly: 1.578 ± 0.783
0.526AsnHis: 0.526 ± 0.495
2.63AsnIle: 2.63 ± 0.437
3.156AsnLys: 3.156 ± 1.513
4.734AsnLeu: 4.734 ± 1.643
0.526AsnMet: 0.526 ± 0.4
2.104AsnAsn: 2.104 ± 1.6
2.63AsnPro: 2.63 ± 0.722
2.104AsnGln: 2.104 ± 1.235
1.052AsnArg: 1.052 ± 0.956
3.156AsnSer: 3.156 ± 1.143
2.63AsnThr: 2.63 ± 1.083
3.156AsnVal: 3.156 ± 0.833
0.526AsnTrp: 0.526 ± 0.4
1.578AsnTyr: 1.578 ± 0.246
0.0AsnXaa: 0.0 ± 0.0
Pro
0.526ProAla: 0.526 ± 0.4
1.052ProCys: 1.052 ± 0.912
3.156ProAsp: 3.156 ± 0.956
1.052ProGlu: 1.052 ± 0.397
2.104ProPhe: 2.104 ± 1.381
2.63ProGly: 2.63 ± 1.304
0.0ProHis: 0.0 ± 0.0
3.682ProIle: 3.682 ± 2.112
1.578ProLys: 1.578 ± 0.638
3.682ProLeu: 3.682 ± 1.71
0.0ProMet: 0.0 ± 0.0
3.156ProAsn: 3.156 ± 0.886
1.578ProPro: 1.578 ± 1.231
1.052ProGln: 1.052 ± 0.502
1.052ProArg: 1.052 ± 0.991
3.682ProSer: 3.682 ± 1.77
0.526ProThr: 0.526 ± 0.4
3.682ProVal: 3.682 ± 0.799
0.0ProTrp: 0.0 ± 0.0
3.682ProTyr: 3.682 ± 1.614
0.0ProXaa: 0.0 ± 0.0
Gln
3.682GlnAla: 3.682 ± 2.942
1.052GlnCys: 1.052 ± 0.534
4.208GlnAsp: 4.208 ± 2.045
2.104GlnGlu: 2.104 ± 1.913
4.208GlnPhe: 4.208 ± 0.949
2.104GlnGly: 2.104 ± 1.318
0.526GlnHis: 0.526 ± 0.495
2.104GlnIle: 2.104 ± 0.572
1.052GlnLys: 1.052 ± 0.397
7.365GlnLeu: 7.365 ± 2.176
1.578GlnMet: 1.578 ± 1.435
1.052GlnAsn: 1.052 ± 0.502
2.104GlnPro: 2.104 ± 0.395
1.578GlnGln: 1.578 ± 0.783
3.682GlnArg: 3.682 ± 0.799
6.312GlnSer: 6.312 ± 2.533
4.208GlnThr: 4.208 ± 1.304
1.578GlnVal: 1.578 ± 0.638
0.0GlnTrp: 0.0 ± 0.0
3.156GlnTyr: 3.156 ± 1.565
0.0GlnXaa: 0.0 ± 0.0
Arg
4.208ArgAla: 4.208 ± 1.977
0.526ArgCys: 0.526 ± 0.495
1.578ArgAsp: 1.578 ± 0.908
3.156ArgGlu: 3.156 ± 1.647
3.156ArgPhe: 3.156 ± 1.061
1.052ArgGly: 1.052 ± 0.883
1.052ArgHis: 1.052 ± 0.991
2.104ArgIle: 2.104 ± 1.245
3.682ArgLys: 3.682 ± 0.72
5.26ArgLeu: 5.26 ± 1.365
0.526ArgMet: 0.526 ± 0.4
4.208ArgAsn: 4.208 ± 2.443
2.104ArgPro: 2.104 ± 0.395
3.156ArgGln: 3.156 ± 0.955
1.052ArgArg: 1.052 ± 0.956
5.26ArgSer: 5.26 ± 1.641
1.052ArgThr: 1.052 ± 0.534
3.682ArgVal: 3.682 ± 1.753
1.052ArgTrp: 1.052 ± 0.502
3.156ArgTyr: 3.156 ± 1.696
0.0ArgXaa: 0.0 ± 0.0
Ser
4.208SerAla: 4.208 ± 1.955
0.526SerCys: 0.526 ± 0.68
6.312SerAsp: 6.312 ± 0.911
4.208SerGlu: 4.208 ± 1.416
6.312SerPhe: 6.312 ± 2.987
3.156SerGly: 3.156 ± 1.033
2.63SerHis: 2.63 ± 1.178
4.208SerIle: 4.208 ± 1.827
6.312SerLys: 6.312 ± 1.165
8.417SerLeu: 8.417 ± 1.382
1.578SerMet: 1.578 ± 1.2
4.734SerAsn: 4.734 ± 1.978
2.63SerPro: 2.63 ± 0.798
6.312SerGln: 6.312 ± 1.901
6.839SerArg: 6.839 ± 1.166
12.099SerSer: 12.099 ± 3.474
5.26SerThr: 5.26 ± 1.075
7.891SerVal: 7.891 ± 1.893
2.104SerTrp: 2.104 ± 1.107
3.682SerTyr: 3.682 ± 1.182
0.0SerXaa: 0.0 ± 0.0
Thr
3.682ThrAla: 3.682 ± 2.471
0.526ThrCys: 0.526 ± 0.4
3.156ThrAsp: 3.156 ± 1.973
1.578ThrGlu: 1.578 ± 0.638
4.734ThrPhe: 4.734 ± 1.421
4.208ThrGly: 4.208 ± 1.164
2.104ThrHis: 2.104 ± 1.129
3.682ThrIle: 3.682 ± 1.476
2.104ThrLys: 2.104 ± 1.381
3.682ThrLeu: 3.682 ± 1.115
0.526ThrMet: 0.526 ± 0.4
2.104ThrAsn: 2.104 ± 0.783
1.052ThrPro: 1.052 ± 0.893
2.63ThrGln: 2.63 ± 0.984
3.682ThrArg: 3.682 ± 1.253
1.578ThrSer: 1.578 ± 0.638
1.578ThrThr: 1.578 ± 0.246
3.682ThrVal: 3.682 ± 1.528
0.0ThrTrp: 0.0 ± 0.0
1.052ThrTyr: 1.052 ± 0.991
0.0ThrXaa: 0.0 ± 0.0
Val
4.734ValAla: 4.734 ± 0.979
2.104ValCys: 2.104 ± 1.003
4.208ValAsp: 4.208 ± 2.156
2.104ValGlu: 2.104 ± 0.572
2.63ValPhe: 2.63 ± 1.207
3.156ValGly: 3.156 ± 1.036
0.526ValHis: 0.526 ± 0.495
2.63ValIle: 2.63 ± 1.366
2.104ValLys: 2.104 ± 0.966
4.208ValLeu: 4.208 ± 1.513
1.052ValMet: 1.052 ± 0.841
1.578ValAsn: 1.578 ± 0.852
3.156ValPro: 3.156 ± 1.49
3.156ValGln: 3.156 ± 2.241
5.786ValArg: 5.786 ± 2.427
6.312ValSer: 6.312 ± 1.554
3.682ValThr: 3.682 ± 2.255
1.578ValVal: 1.578 ± 1.26
0.0ValTrp: 0.0 ± 0.0
2.104ValTyr: 2.104 ± 1.107
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.526TrpAsp: 0.526 ± 0.478
2.104TrpGlu: 2.104 ± 0.867
1.578TrpPhe: 1.578 ± 1.2
0.0TrpGly: 0.0 ± 0.0
0.526TrpHis: 0.526 ± 0.495
0.0TrpIle: 0.0 ± 0.0
1.052TrpLys: 1.052 ± 0.534
1.578TrpLeu: 1.578 ± 0.685
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.526TrpGln: 0.526 ± 0.4
1.052TrpArg: 1.052 ± 0.502
0.526TrpSer: 0.526 ± 0.495
0.526TrpThr: 0.526 ± 0.4
1.052TrpVal: 1.052 ± 0.883
0.526TrpTrp: 0.526 ± 0.478
1.052TrpTyr: 1.052 ± 0.991
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.052TyrAla: 1.052 ± 0.534
1.052TyrCys: 1.052 ± 1.024
4.208TyrAsp: 4.208 ± 0.916
1.578TyrGlu: 1.578 ± 1.092
3.682TyrPhe: 3.682 ± 1.537
3.682TyrGly: 3.682 ± 1.113
2.63TyrHis: 2.63 ± 0.629
1.052TyrIle: 1.052 ± 0.397
1.578TyrLys: 1.578 ± 0.948
3.682TyrLeu: 3.682 ± 1.239
0.526TyrMet: 0.526 ± 0.4
3.156TyrAsn: 3.156 ± 0.827
2.104TyrPro: 2.104 ± 1.381
5.786TyrGln: 5.786 ± 1.233
1.052TyrArg: 1.052 ± 0.397
5.26TyrSer: 5.26 ± 1.258
1.052TyrThr: 1.052 ± 0.502
2.63TyrVal: 2.63 ± 1.207
1.052TyrTrp: 1.052 ± 0.991
1.578TyrTyr: 1.578 ± 0.948
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1902 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski