Amino acid dipepetide frequency for Malvastrum leaf curl virus - [G87]

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.633AlaAla: 3.633 ± 1.466
0.0AlaCys: 0.0 ± 0.0
2.725AlaAsp: 2.725 ± 1.347
1.817AlaGlu: 1.817 ± 1.524
0.908AlaPhe: 0.908 ± 1.051
0.0AlaGly: 0.0 ± 0.0
0.908AlaHis: 0.908 ± 1.299
2.725AlaIle: 2.725 ± 1.142
4.541AlaLys: 4.541 ± 1.198
5.45AlaLeu: 5.45 ± 3.11
0.0AlaMet: 0.0 ± 0.0
3.633AlaAsn: 3.633 ± 2.035
2.725AlaPro: 2.725 ± 1.469
2.725AlaGln: 2.725 ± 1.466
3.633AlaArg: 3.633 ± 2.035
3.633AlaSer: 3.633 ± 2.866
3.633AlaThr: 3.633 ± 1.569
2.725AlaVal: 2.725 ± 1.142
0.908AlaTrp: 0.908 ± 0.669
0.908AlaTyr: 0.908 ± 0.669
0.0AlaXaa: 0.0 ± 0.0
Cys
1.817CysAla: 1.817 ± 1.071
1.817CysCys: 1.817 ± 2.598
0.0CysAsp: 0.0 ± 0.0
0.908CysGlu: 0.908 ± 0.79
0.908CysPhe: 0.908 ± 1.167
1.817CysGly: 1.817 ± 1.071
0.0CysHis: 0.0 ± 0.0
0.908CysIle: 0.908 ± 1.167
0.908CysLys: 0.908 ± 0.79
4.541CysLeu: 4.541 ± 1.621
0.908CysMet: 0.908 ± 1.299
2.725CysAsn: 2.725 ± 1.198
2.725CysPro: 2.725 ± 2.423
1.817CysGln: 1.817 ± 1.607
0.908CysArg: 0.908 ± 0.669
3.633CysSer: 3.633 ± 1.25
0.908CysThr: 0.908 ± 0.669
0.908CysVal: 0.908 ± 0.79
0.0CysTrp: 0.0 ± 0.0
0.908CysTyr: 0.908 ± 0.79
0.0CysXaa: 0.0 ± 0.0
Asp
2.725AspAla: 2.725 ± 1.16
1.817AspCys: 1.817 ± 1.337
0.908AspAsp: 0.908 ± 0.669
1.817AspGlu: 1.817 ± 0.733
2.725AspPhe: 2.725 ± 1.16
2.725AspGly: 2.725 ± 1.444
0.908AspHis: 0.908 ± 1.051
2.725AspIle: 2.725 ± 1.911
0.0AspLys: 0.0 ± 0.0
6.358AspLeu: 6.358 ± 2.86
0.0AspMet: 0.0 ± 0.0
3.633AspAsn: 3.633 ± 1.035
1.817AspPro: 1.817 ± 1.213
1.817AspGln: 1.817 ± 1.247
4.541AspArg: 4.541 ± 1.471
5.45AspSer: 5.45 ± 1.389
2.725AspThr: 2.725 ± 1.498
4.541AspVal: 4.541 ± 1.413
0.908AspTrp: 0.908 ± 0.669
0.908AspTyr: 0.908 ± 1.299
0.0AspXaa: 0.0 ± 0.0
Glu
3.633GluAla: 3.633 ± 1.929
2.725GluCys: 2.725 ± 1.16
0.0GluAsp: 0.0 ± 0.0
9.083GluGlu: 9.083 ± 5.156
1.817GluPhe: 1.817 ± 1.213
4.541GluGly: 4.541 ± 1.794
0.0GluHis: 0.0 ± 0.0
0.0GluIle: 0.0 ± 0.0
0.908GluLys: 0.908 ± 0.669
6.358GluLeu: 6.358 ± 1.189
0.0GluMet: 0.0 ± 0.0
2.725GluAsn: 2.725 ± 1.687
2.725GluPro: 2.725 ± 0.855
0.908GluGln: 0.908 ± 0.79
0.0GluArg: 0.0 ± 0.0
5.45GluSer: 5.45 ± 2.669
1.817GluThr: 1.817 ± 1.524
2.725GluVal: 2.725 ± 1.103
2.725GluTrp: 2.725 ± 1.444
0.908GluTyr: 0.908 ± 0.669
0.0GluXaa: 0.0 ± 0.0
Phe
0.0PheAla: 0.0 ± 0.0
0.908PheCys: 0.908 ± 0.79
3.633PheAsp: 3.633 ± 1.466
2.725PheGlu: 2.725 ± 1.16
0.908PhePhe: 0.908 ± 0.669
0.0PheGly: 0.0 ± 0.0
2.725PheHis: 2.725 ± 1.466
2.725PheIle: 2.725 ± 1.416
2.725PheLys: 2.725 ± 2.179
6.358PheLeu: 6.358 ± 3.164
1.817PheMet: 1.817 ± 1.021
1.817PheAsn: 1.817 ± 1.372
1.817PhePro: 1.817 ± 1.524
4.541PheGln: 4.541 ± 1.908
1.817PheArg: 1.817 ± 1.524
2.725PheSer: 2.725 ± 1.444
2.725PheThr: 2.725 ± 2.014
1.817PheVal: 1.817 ± 0.733
0.908PheTrp: 0.908 ± 0.79
0.908PheTyr: 0.908 ± 0.79
0.0PheXaa: 0.0 ± 0.0
Gly
3.633GlyAla: 3.633 ± 1.929
1.817GlyCys: 1.817 ± 1.105
3.633GlyAsp: 3.633 ± 1.456
0.908GlyGlu: 0.908 ± 1.167
2.725GlyPhe: 2.725 ± 1.969
2.725GlyGly: 2.725 ± 1.16
1.817GlyHis: 1.817 ± 0.733
1.817GlyIle: 1.817 ± 1.112
5.45GlyLys: 5.45 ± 2.2
0.908GlyLeu: 0.908 ± 0.79
1.817GlyMet: 1.817 ± 0.756
0.908GlyAsn: 0.908 ± 0.669
2.725GlyPro: 2.725 ± 1.16
3.633GlyGln: 3.633 ± 1.066
1.817GlyArg: 1.817 ± 1.337
1.817GlySer: 1.817 ± 1.337
3.633GlyThr: 3.633 ± 1.798
2.725GlyVal: 2.725 ± 2.486
0.0GlyTrp: 0.0 ± 0.0
0.908GlyTyr: 0.908 ± 1.299
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
1.817HisCys: 1.817 ± 1.692
0.908HisAsp: 0.908 ± 1.167
1.817HisGlu: 1.817 ± 1.607
3.633HisPhe: 3.633 ± 1.378
1.817HisGly: 1.817 ± 1.692
2.725HisHis: 2.725 ± 2.453
1.817HisIle: 1.817 ± 1.035
1.817HisLys: 1.817 ± 1.607
2.725HisLeu: 2.725 ± 1.469
0.908HisMet: 0.908 ± 0.79
2.725HisAsn: 2.725 ± 2.006
1.817HisPro: 1.817 ± 1.112
0.908HisGln: 0.908 ± 0.669
4.541HisArg: 4.541 ± 2.643
3.633HisSer: 3.633 ± 2.366
0.908HisThr: 0.908 ± 0.79
0.908HisVal: 0.908 ± 0.669
0.0HisTrp: 0.0 ± 0.0
0.908HisTyr: 0.908 ± 0.669
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
1.817IleCys: 1.817 ± 0.733
0.908IleAsp: 0.908 ± 0.669
0.908IleGlu: 0.908 ± 0.669
2.725IlePhe: 2.725 ± 1.444
0.908IleGly: 0.908 ± 0.79
0.908IleHis: 0.908 ± 1.167
1.817IleIle: 1.817 ± 1.372
7.266IleLys: 7.266 ± 1.448
0.908IleLeu: 0.908 ± 1.299
0.908IleMet: 0.908 ± 0.919
2.725IleAsn: 2.725 ± 1.434
1.817IlePro: 1.817 ± 1.337
3.633IleGln: 3.633 ± 1.512
6.358IleArg: 6.358 ± 2.045
5.45IleSer: 5.45 ± 1.957
3.633IleThr: 3.633 ± 2.286
2.725IleVal: 2.725 ± 1.369
3.633IleTrp: 3.633 ± 2.153
1.817IleTyr: 1.817 ± 1.337
0.0IleXaa: 0.0 ± 0.0
Lys
4.541LysAla: 4.541 ± 2.406
1.817LysCys: 1.817 ± 1.112
1.817LysAsp: 1.817 ± 1.337
4.541LysGlu: 4.541 ± 1.822
1.817LysPhe: 1.817 ± 0.733
0.908LysGly: 0.908 ± 0.669
1.817LysHis: 1.817 ± 1.112
3.633LysIle: 3.633 ± 1.208
1.817LysLys: 1.817 ± 2.101
0.908LysLeu: 0.908 ± 0.669
0.908LysMet: 0.908 ± 0.79
6.358LysAsn: 6.358 ± 2.044
3.633LysPro: 3.633 ± 1.252
0.0LysGln: 0.0 ± 0.0
2.725LysArg: 2.725 ± 2.369
8.174LysSer: 8.174 ± 2.445
0.908LysThr: 0.908 ± 0.669
4.541LysVal: 4.541 ± 3.008
0.0LysTrp: 0.0 ± 0.0
4.541LysTyr: 4.541 ± 2.091
0.0LysXaa: 0.0 ± 0.0
Leu
3.633LeuAla: 3.633 ± 2.285
2.725LeuCys: 2.725 ± 1.469
6.358LeuAsp: 6.358 ± 2.767
2.725LeuGlu: 2.725 ± 1.469
1.817LeuPhe: 1.817 ± 1.579
3.633LeuGly: 3.633 ± 2.2
2.725LeuHis: 2.725 ± 1.416
2.725LeuIle: 2.725 ± 2.672
3.633LeuLys: 3.633 ± 1.066
2.725LeuLeu: 2.725 ± 2.174
2.725LeuMet: 2.725 ± 1.106
5.45LeuAsn: 5.45 ± 2.268
2.725LeuPro: 2.725 ± 2.014
5.45LeuGln: 5.45 ± 1.395
7.266LeuArg: 7.266 ± 2.808
2.725LeuSer: 2.725 ± 1.16
6.358LeuThr: 6.358 ± 2.571
5.45LeuVal: 5.45 ± 3.678
0.0LeuTrp: 0.0 ± 0.0
2.725LeuTyr: 2.725 ± 1.107
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.0MetCys: 0.0 ± 0.0
2.725MetAsp: 2.725 ± 1.687
0.908MetGlu: 0.908 ± 0.937
0.908MetPhe: 0.908 ± 1.051
2.725MetGly: 2.725 ± 1.103
1.817MetHis: 1.817 ± 0.733
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
1.817MetLeu: 1.817 ± 1.524
1.817MetMet: 1.817 ± 1.687
0.908MetAsn: 0.908 ± 0.79
0.0MetPro: 0.0 ± 0.0
0.908MetGln: 0.908 ± 0.669
0.908MetArg: 0.908 ± 1.051
2.725MetSer: 2.725 ± 1.103
0.0MetThr: 0.0 ± 0.0
0.0MetVal: 0.0 ± 0.0
1.817MetTrp: 1.817 ± 1.213
1.817MetTyr: 1.817 ± 1.579
0.0MetXaa: 0.0 ± 0.0
Asn
1.817AsnAla: 1.817 ± 1.337
2.725AsnCys: 2.725 ± 1.434
4.541AsnAsp: 4.541 ± 2.05
1.817AsnGlu: 1.817 ± 1.433
0.908AsnPhe: 0.908 ± 0.79
2.725AsnGly: 2.725 ± 1.337
1.817AsnHis: 1.817 ± 1.372
2.725AsnIle: 2.725 ± 1.16
0.908AsnLys: 0.908 ± 0.669
5.45AsnLeu: 5.45 ± 2.43
0.0AsnMet: 0.0 ± 0.0
4.541AsnAsn: 4.541 ± 1.345
3.633AsnPro: 3.633 ± 1.517
2.725AsnGln: 2.725 ± 1.198
2.725AsnArg: 2.725 ± 1.369
6.358AsnSer: 6.358 ± 1.964
3.633AsnThr: 3.633 ± 1.318
4.541AsnVal: 4.541 ± 1.577
0.908AsnTrp: 0.908 ± 0.669
2.725AsnTyr: 2.725 ± 1.416
0.0AsnXaa: 0.0 ± 0.0
Pro
3.633ProAla: 3.633 ± 2.1
2.725ProCys: 2.725 ± 1.65
3.633ProAsp: 3.633 ± 1.318
3.633ProGlu: 3.633 ± 1.586
1.817ProPhe: 1.817 ± 1.112
0.908ProGly: 0.908 ± 0.669
3.633ProHis: 3.633 ± 1.929
4.541ProIle: 4.541 ± 4.062
3.633ProLys: 3.633 ± 1.746
4.541ProLeu: 4.541 ± 1.396
3.633ProMet: 3.633 ± 1.979
3.633ProAsn: 3.633 ± 1.066
2.725ProPro: 2.725 ± 2.006
1.817ProGln: 1.817 ± 1.472
5.45ProArg: 5.45 ± 2.502
4.541ProSer: 4.541 ± 1.771
7.266ProThr: 7.266 ± 2.838
2.725ProVal: 2.725 ± 1.466
0.0ProTrp: 0.0 ± 0.0
1.817ProTyr: 1.817 ± 0.733
0.0ProXaa: 0.0 ± 0.0
Gln
3.633GlnAla: 3.633 ± 1.544
0.0GlnCys: 0.0 ± 0.0
1.817GlnAsp: 1.817 ± 1.692
1.817GlnGlu: 1.817 ± 1.337
4.541GlnPhe: 4.541 ± 2.457
1.817GlnGly: 1.817 ± 1.213
1.817GlnHis: 1.817 ± 1.283
1.817GlnIle: 1.817 ± 1.112
1.817GlnLys: 1.817 ± 1.692
2.725GlnLeu: 2.725 ± 1.498
0.908GlnMet: 0.908 ± 1.051
1.817GlnAsn: 1.817 ± 1.213
4.541GlnPro: 4.541 ± 3.14
1.817GlnGln: 1.817 ± 0.733
1.817GlnArg: 1.817 ± 0.733
4.541GlnSer: 4.541 ± 1.471
3.633GlnThr: 3.633 ± 1.506
4.541GlnVal: 4.541 ± 1.505
0.0GlnTrp: 0.0 ± 0.0
0.908GlnTyr: 0.908 ± 0.79
0.0GlnXaa: 0.0 ± 0.0
Arg
0.908ArgAla: 0.908 ± 0.79
0.908ArgCys: 0.908 ± 1.299
4.541ArgAsp: 4.541 ± 2.504
6.358ArgGlu: 6.358 ± 1.652
4.541ArgPhe: 4.541 ± 2.05
4.541ArgGly: 4.541 ± 1.505
2.725ArgHis: 2.725 ± 1.777
2.725ArgIle: 2.725 ± 1.361
3.633ArgLys: 3.633 ± 2.582
4.541ArgLeu: 4.541 ± 2.674
1.817ArgMet: 1.817 ± 1.247
1.817ArgAsn: 1.817 ± 1.112
5.45ArgPro: 5.45 ± 1.726
1.817ArgGln: 1.817 ± 1.213
8.174ArgArg: 8.174 ± 3.812
7.266ArgSer: 7.266 ± 1.948
2.725ArgThr: 2.725 ± 1.416
6.358ArgVal: 6.358 ± 2.397
0.0ArgTrp: 0.0 ± 0.0
0.908ArgTyr: 0.908 ± 1.299
0.0ArgXaa: 0.0 ± 0.0
Ser
3.633SerAla: 3.633 ± 2.674
1.817SerCys: 1.817 ± 1.579
2.725SerAsp: 2.725 ± 0.855
2.725SerGlu: 2.725 ± 1.434
2.725SerPhe: 2.725 ± 0.855
1.817SerGly: 1.817 ± 1.337
4.541SerHis: 4.541 ± 1.381
8.174SerIle: 8.174 ± 4.071
7.266SerLys: 7.266 ± 2.76
4.541SerLeu: 4.541 ± 2.05
0.0SerMet: 0.0 ± 0.0
2.725SerAsn: 2.725 ± 1.444
13.624SerPro: 13.624 ± 1.709
1.817SerGln: 1.817 ± 1.213
8.174SerArg: 8.174 ± 3.784
11.807SerSer: 11.807 ± 4.098
7.266SerThr: 7.266 ± 2.983
0.908SerVal: 0.908 ± 1.051
1.817SerTrp: 1.817 ± 1.579
2.725SerTyr: 2.725 ± 1.444
0.0SerXaa: 0.0 ± 0.0
Thr
4.541ThrAla: 4.541 ± 3.119
1.817ThrCys: 1.817 ± 1.472
0.908ThrAsp: 0.908 ± 0.937
0.0ThrGlu: 0.0 ± 0.0
1.817ThrPhe: 1.817 ± 1.035
5.45ThrGly: 5.45 ± 2.028
4.541ThrHis: 4.541 ± 1.859
1.817ThrIle: 1.817 ± 1.337
2.725ThrLys: 2.725 ± 1.416
2.725ThrLeu: 2.725 ± 1.361
0.908ThrMet: 0.908 ± 0.669
3.633ThrAsn: 3.633 ± 1.466
7.266ThrPro: 7.266 ± 1.931
2.725ThrGln: 2.725 ± 2.453
3.633ThrArg: 3.633 ± 1.208
3.633ThrSer: 3.633 ± 2.479
1.817ThrThr: 1.817 ± 1.283
6.358ThrVal: 6.358 ± 3.786
0.908ThrTrp: 0.908 ± 0.937
1.817ThrTyr: 1.817 ± 1.213
0.0ThrXaa: 0.0 ± 0.0
Val
0.0ValAla: 0.0 ± 0.0
1.817ValCys: 1.817 ± 1.433
3.633ValAsp: 3.633 ± 1.98
3.633ValGlu: 3.633 ± 2.426
1.817ValPhe: 1.817 ± 1.372
2.725ValGly: 2.725 ± 1.607
0.908ValHis: 0.908 ± 1.299
4.541ValIle: 4.541 ± 1.471
4.541ValLys: 4.541 ± 2.223
4.541ValLeu: 4.541 ± 2.05
0.908ValMet: 0.908 ± 1.299
2.725ValAsn: 2.725 ± 1.656
3.633ValPro: 3.633 ± 1.25
6.358ValGln: 6.358 ± 2.872
3.633ValArg: 3.633 ± 2.555
2.725ValSer: 2.725 ± 1.469
2.725ValThr: 2.725 ± 2.369
2.725ValVal: 2.725 ± 1.466
0.0ValTrp: 0.0 ± 0.0
4.541ValTyr: 4.541 ± 1.505
0.0ValXaa: 0.0 ± 0.0
Trp
2.725TrpAla: 2.725 ± 2.006
0.0TrpCys: 0.0 ± 0.0
0.908TrpAsp: 0.908 ± 1.299
0.908TrpGlu: 0.908 ± 0.79
0.908TrpPhe: 0.908 ± 0.937
1.817TrpGly: 1.817 ± 1.337
0.0TrpHis: 0.0 ± 0.0
0.908TrpIle: 0.908 ± 0.79
0.0TrpLys: 0.0 ± 0.0
0.0TrpLeu: 0.0 ± 0.0
0.908TrpMet: 0.908 ± 0.79
0.0TrpAsn: 0.0 ± 0.0
0.908TrpPro: 0.908 ± 0.669
0.0TrpGln: 0.0 ± 0.0
0.908TrpArg: 0.908 ± 1.051
0.0TrpSer: 0.0 ± 0.0
2.725TrpThr: 2.725 ± 2.422
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.908TrpTyr: 0.908 ± 0.669
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.725TyrAla: 2.725 ± 1.369
0.0TyrCys: 0.0 ± 0.0
2.725TyrAsp: 2.725 ± 1.142
0.0TyrGlu: 0.0 ± 0.0
3.633TyrPhe: 3.633 ± 1.569
1.817TyrGly: 1.817 ± 0.733
0.0TyrHis: 0.0 ± 0.0
2.725TyrIle: 2.725 ± 1.416
1.817TyrLys: 1.817 ± 1.337
5.45TyrLeu: 5.45 ± 1.726
0.0TyrMet: 0.0 ± 0.0
2.725TyrAsn: 2.725 ± 1.416
0.908TyrPro: 0.908 ± 0.669
0.908TyrGln: 0.908 ± 1.167
2.725TyrArg: 2.725 ± 2.369
4.541TyrSer: 4.541 ± 2.515
0.0TyrThr: 0.0 ± 0.0
0.908TyrVal: 0.908 ± 1.299
0.0TyrTrp: 0.0 ± 0.0
0.908TyrTyr: 0.908 ± 1.051
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1102 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski