Amino acid dipepetide frequency for Galliform aveparvovirus 1 (isolate Chicken/Hungary/ABU-P1/-/-) (ChPV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.491AlaAla: 3.491 ± 0.386
0.499AlaCys: 0.499 ± 0.417
3.99AlaAsp: 3.99 ± 0.754
2.993AlaGlu: 2.993 ± 0.662
1.995AlaPhe: 1.995 ± 0.371
2.494AlaGly: 2.494 ± 0.708
0.0AlaHis: 0.0 ± 0.0
3.99AlaIle: 3.99 ± 1.453
4.988AlaLys: 4.988 ± 0.997
1.496AlaLeu: 1.496 ± 1.094
0.998AlaMet: 0.998 ± 0.837
4.988AlaAsn: 4.988 ± 1.356
5.985AlaPro: 5.985 ± 2.273
1.995AlaGln: 1.995 ± 1.034
2.494AlaArg: 2.494 ± 1.262
3.491AlaSer: 3.491 ± 0.565
2.993AlaThr: 2.993 ± 0.309
2.494AlaVal: 2.494 ± 0.624
0.499AlaTrp: 0.499 ± 0.417
1.496AlaTyr: 1.496 ± 0.731
0.0AlaXaa: 0.0 ± 0.0
Cys
0.499CysAla: 0.499 ± 0.417
0.499CysCys: 0.499 ± 0.417
0.998CysAsp: 0.998 ± 0.508
0.499CysGlu: 0.499 ± 0.417
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.499CysHis: 0.499 ± 0.417
0.998CysIle: 0.998 ± 0.837
2.494CysLys: 2.494 ± 0.773
2.993CysLeu: 2.993 ± 0.309
0.499CysMet: 0.499 ± 0.417
0.998CysAsn: 0.998 ± 0.837
1.995CysPro: 1.995 ± 0.371
0.0CysGln: 0.0 ± 0.0
0.499CysArg: 0.499 ± 0.417
2.494CysSer: 2.494 ± 0.773
3.99CysThr: 3.99 ± 1.174
3.491CysVal: 3.491 ± 0.565
1.496CysTrp: 1.496 ± 1.094
0.499CysTyr: 0.499 ± 0.417
0.0CysXaa: 0.0 ± 0.0
Asp
2.993AspAla: 2.993 ± 0.798
0.998AspCys: 0.998 ± 0.833
2.993AspAsp: 2.993 ± 0.968
7.481AspGlu: 7.481 ± 2.41
2.993AspPhe: 2.993 ± 0.968
1.995AspGly: 1.995 ± 1.015
0.998AspHis: 0.998 ± 0.396
2.993AspIle: 2.993 ± 0.798
2.494AspLys: 2.494 ± 0.708
3.99AspLeu: 3.99 ± 2.016
1.496AspMet: 1.496 ± 0.818
1.496AspAsn: 1.496 ± 0.155
3.491AspPro: 3.491 ± 1.292
3.491AspGln: 3.491 ± 1.127
0.499AspArg: 0.499 ± 0.742
2.494AspSer: 2.494 ± 0.773
5.985AspThr: 5.985 ± 1.75
2.494AspVal: 2.494 ± 0.708
0.998AspTrp: 0.998 ± 0.508
0.0AspTyr: 0.0 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
1.496GluAla: 1.496 ± 0.729
1.496GluCys: 1.496 ± 1.25
0.998GluAsp: 0.998 ± 0.734
5.486GluGlu: 5.486 ± 2.257
1.496GluPhe: 1.496 ± 0.729
5.486GluGly: 5.486 ± 1.003
0.998GluHis: 0.998 ± 0.833
2.993GluIle: 2.993 ± 1.186
1.995GluLys: 1.995 ± 1.667
5.486GluLeu: 5.486 ± 0.621
0.998GluMet: 0.998 ± 0.396
6.983GluAsn: 6.983 ± 2.743
2.993GluPro: 2.993 ± 0.309
1.496GluGln: 1.496 ± 0.155
0.499GluArg: 0.499 ± 0.359
6.484GluSer: 6.484 ± 0.562
5.985GluThr: 5.985 ± 1.112
0.499GluVal: 0.499 ± 0.417
2.494GluTrp: 2.494 ± 0.624
1.995GluTyr: 1.995 ± 1.015
0.0GluXaa: 0.0 ± 0.0
Phe
0.998PheAla: 0.998 ± 0.508
1.995PheCys: 1.995 ± 0.371
0.998PheAsp: 0.998 ± 0.508
1.496PheGlu: 1.496 ± 1.25
0.998PhePhe: 0.998 ± 0.717
0.998PheGly: 0.998 ± 0.508
1.496PheHis: 1.496 ± 1.094
1.995PheIle: 1.995 ± 0.394
1.995PheLys: 1.995 ± 0.394
1.496PheLeu: 1.496 ± 1.25
0.499PheMet: 0.499 ± 0.417
4.489PheAsn: 4.489 ± 0.464
7.481PhePro: 7.481 ± 0.667
0.0PheGln: 0.0 ± 0.0
0.0PheArg: 0.0 ± 0.0
3.99PheSer: 3.99 ± 0.741
2.993PheThr: 2.993 ± 0.968
1.995PheVal: 1.995 ± 0.371
1.496PheTrp: 1.496 ± 0.155
0.998PheTyr: 0.998 ± 0.508
0.0PheXaa: 0.0 ± 0.0
Gly
2.993GlyAla: 2.993 ± 0.818
1.496GlyCys: 1.496 ± 0.155
3.99GlyAsp: 3.99 ± 1.283
1.496GlyGlu: 1.496 ± 1.25
2.993GlyPhe: 2.993 ± 0.309
11.471GlyGly: 11.471 ± 3.14
1.995GlyHis: 1.995 ± 1.015
4.988GlyIle: 4.988 ± 0.892
4.489GlyLys: 4.489 ± 1.866
3.491GlyLeu: 3.491 ± 0.386
2.993GlyMet: 2.993 ± 1.523
5.486GlyAsn: 5.486 ± 0.892
6.484GlyPro: 6.484 ± 1.908
2.993GlyGln: 2.993 ± 0.309
3.99GlyArg: 3.99 ± 1.303
2.494GlySer: 2.494 ± 2.083
4.489GlyThr: 4.489 ± 0.808
0.0GlyVal: 0.0 ± 0.0
0.998GlyTrp: 0.998 ± 0.833
2.993GlyTyr: 2.993 ± 0.662
0.0GlyXaa: 0.0 ± 0.0
His
1.496HisAla: 1.496 ± 1.094
0.998HisCys: 0.998 ± 0.508
0.499HisAsp: 0.499 ± 0.417
0.998HisGlu: 0.998 ± 0.837
0.998HisPhe: 0.998 ± 0.508
1.995HisGly: 1.995 ± 0.371
0.499HisHis: 0.499 ± 0.359
2.494HisIle: 2.494 ± 0.351
0.499HisLys: 0.499 ± 0.359
1.995HisLeu: 1.995 ± 1.429
0.499HisMet: 0.499 ± 0.417
0.998HisAsn: 0.998 ± 0.833
0.499HisPro: 0.499 ± 0.417
0.499HisGln: 0.499 ± 0.359
0.998HisArg: 0.998 ± 0.508
0.998HisSer: 0.998 ± 0.508
1.496HisThr: 1.496 ± 0.731
1.995HisVal: 1.995 ± 0.394
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
0.499IleAla: 0.499 ± 0.417
0.499IleCys: 0.499 ± 0.417
4.489IleAsp: 4.489 ± 0.464
2.494IleGlu: 2.494 ± 0.634
4.988IlePhe: 4.988 ± 1.248
4.489IleGly: 4.489 ± 0.443
0.998IleHis: 0.998 ± 0.837
1.995IleIle: 1.995 ± 0.371
0.998IleLys: 0.998 ± 0.837
1.995IleLeu: 1.995 ± 1.429
0.499IleMet: 0.499 ± 0.417
0.998IleAsn: 0.998 ± 0.833
4.988IlePro: 4.988 ± 0.997
4.489IleGln: 4.489 ± 2.018
2.494IleArg: 2.494 ± 0.773
3.491IleSer: 3.491 ± 1.127
4.988IleThr: 4.988 ± 0.654
3.491IleVal: 3.491 ± 0.386
3.99IleTrp: 3.99 ± 1.174
2.993IleTyr: 2.993 ± 0.309
0.0IleXaa: 0.0 ± 0.0
Lys
6.484LysAla: 6.484 ± 1.528
0.998LysCys: 0.998 ± 0.833
1.496LysAsp: 1.496 ± 0.155
1.995LysGlu: 1.995 ± 1.034
1.995LysPhe: 1.995 ± 1.667
1.995LysGly: 1.995 ± 0.801
0.998LysHis: 0.998 ± 0.396
3.99LysIle: 3.99 ± 1.92
2.993LysLys: 2.993 ± 0.662
3.491LysLeu: 3.491 ± 2.917
2.494LysMet: 2.494 ± 0.708
3.99LysAsn: 3.99 ± 1.82
2.993LysPro: 2.993 ± 0.662
1.496LysGln: 1.496 ± 0.885
2.993LysArg: 2.993 ± 0.818
1.496LysSer: 1.496 ± 1.25
3.99LysThr: 3.99 ± 0.371
3.99LysVal: 3.99 ± 0.754
0.0LysTrp: 0.0 ± 0.0
1.496LysTyr: 1.496 ± 0.729
0.0LysXaa: 0.0 ± 0.0
Leu
4.489LeuAla: 4.489 ± 1.285
3.491LeuCys: 3.491 ± 2.917
3.99LeuAsp: 3.99 ± 0.559
4.489LeuGlu: 4.489 ± 0.626
0.998LeuPhe: 0.998 ± 0.833
0.998LeuGly: 0.998 ± 0.508
2.494LeuHis: 2.494 ± 0.773
2.993LeuIle: 2.993 ± 1.186
3.491LeuLys: 3.491 ± 2.58
3.491LeuLeu: 3.491 ± 1.601
1.995LeuMet: 1.995 ± 1.015
2.993LeuAsn: 2.993 ± 1.186
3.491LeuPro: 3.491 ± 1.049
1.995LeuGln: 1.995 ± 0.371
2.494LeuArg: 2.494 ± 0.773
2.494LeuSer: 2.494 ± 0.708
4.988LeuThr: 4.988 ± 0.654
2.494LeuVal: 2.494 ± 0.773
0.499LeuTrp: 0.499 ± 0.417
5.486LeuTyr: 5.486 ± 1.226
0.0LeuXaa: 0.0 ± 0.0
Met
1.995MetAla: 1.995 ± 0.371
0.499MetCys: 0.499 ± 0.742
1.496MetAsp: 1.496 ± 0.818
1.995MetGlu: 1.995 ± 0.371
1.995MetPhe: 1.995 ± 0.371
1.496MetGly: 1.496 ± 0.155
0.0MetHis: 0.0 ± 0.0
1.995MetIle: 1.995 ± 1.015
1.496MetLys: 1.496 ± 0.736
2.494MetLeu: 2.494 ± 0.708
1.496MetMet: 1.496 ± 0.155
0.998MetAsn: 0.998 ± 0.508
2.494MetPro: 2.494 ± 0.624
0.499MetGln: 0.499 ± 0.417
2.494MetArg: 2.494 ± 0.624
1.496MetSer: 1.496 ± 0.155
2.993MetThr: 2.993 ± 0.798
0.499MetVal: 0.499 ± 0.417
0.0MetTrp: 0.0 ± 0.0
0.499MetTyr: 0.499 ± 0.417
0.0MetXaa: 0.0 ± 0.0
Asn
3.99AsnAla: 3.99 ± 0.591
0.998AsnCys: 0.998 ± 0.508
1.995AsnAsp: 1.995 ± 0.371
4.489AsnGlu: 4.489 ± 0.464
1.995AsnPhe: 1.995 ± 0.371
4.988AsnGly: 4.988 ± 1.248
1.995AsnHis: 1.995 ± 1.12
1.995AsnIle: 1.995 ± 0.641
3.491AsnLys: 3.491 ± 0.732
4.489AsnLeu: 4.489 ± 1.139
1.995AsnMet: 1.995 ± 0.559
2.494AsnAsn: 2.494 ± 0.773
3.491AsnPro: 3.491 ± 0.798
5.985AsnGln: 5.985 ± 0.669
1.496AsnArg: 1.496 ± 0.155
2.993AsnSer: 2.993 ± 0.309
3.491AsnThr: 3.491 ± 1.127
3.99AsnVal: 3.99 ± 1.174
1.995AsnTrp: 1.995 ± 0.371
3.491AsnTyr: 3.491 ± 1.459
0.0AsnXaa: 0.0 ± 0.0
Pro
3.99ProAla: 3.99 ± 0.559
0.998ProCys: 0.998 ± 1.484
5.985ProAsp: 5.985 ± 1.985
3.491ProGlu: 3.491 ± 1.049
1.496ProPhe: 1.496 ± 0.155
5.985ProGly: 5.985 ± 1.75
0.0ProHis: 0.0 ± 0.0
4.489ProIle: 4.489 ± 0.852
4.988ProLys: 4.988 ± 0.702
3.99ProLeu: 3.99 ± 0.754
0.998ProMet: 0.998 ± 0.508
2.494ProAsn: 2.494 ± 0.351
0.998ProPro: 0.998 ± 0.833
3.491ProGln: 3.491 ± 1.098
5.985ProArg: 5.985 ± 2.303
5.985ProSer: 5.985 ± 0.669
4.489ProThr: 4.489 ± 0.923
2.993ProVal: 2.993 ± 1.186
1.995ProTrp: 1.995 ± 1.015
2.993ProTyr: 2.993 ± 0.662
0.0ProXaa: 0.0 ± 0.0
Gln
1.496GlnAla: 1.496 ± 0.63
0.499GlnCys: 0.499 ± 0.742
1.496GlnAsp: 1.496 ± 1.094
2.993GlnGlu: 2.993 ± 0.605
3.491GlnPhe: 3.491 ± 0.386
2.993GlnGly: 2.993 ± 0.605
1.995GlnHis: 1.995 ± 0.897
5.486GlnIle: 5.486 ± 0.495
3.99GlnLys: 3.99 ± 0.898
2.494GlnLeu: 2.494 ± 0.624
2.993GlnMet: 2.993 ± 0.824
1.496GlnAsn: 1.496 ± 0.155
1.496GlnPro: 1.496 ± 0.729
2.494GlnGln: 2.494 ± 1.207
2.494GlnArg: 2.494 ± 1.207
1.496GlnSer: 1.496 ± 0.155
2.993GlnThr: 2.993 ± 1.636
3.491GlnVal: 3.491 ± 1.127
0.998GlnTrp: 0.998 ± 0.508
6.983GlnTyr: 6.983 ± 3.553
0.0GlnXaa: 0.0 ± 0.0
Arg
2.494ArgAla: 2.494 ± 0.624
0.499ArgCys: 0.499 ± 0.417
1.995ArgAsp: 1.995 ± 1.015
1.995ArgGlu: 1.995 ± 0.371
1.496ArgPhe: 1.496 ± 0.729
3.99ArgGly: 3.99 ± 0.371
0.998ArgHis: 0.998 ± 0.508
0.998ArgIle: 0.998 ± 0.833
1.496ArgLys: 1.496 ± 0.63
5.486ArgLeu: 5.486 ± 0.495
0.998ArgMet: 0.998 ± 0.837
2.494ArgAsn: 2.494 ± 0.773
1.995ArgPro: 1.995 ± 1.015
3.491ArgGln: 3.491 ± 0.479
0.499ArgArg: 0.499 ± 0.417
3.99ArgSer: 3.99 ± 2.03
1.995ArgThr: 1.995 ± 1.015
0.499ArgVal: 0.499 ± 0.359
2.494ArgTrp: 2.494 ± 1.207
1.995ArgTyr: 1.995 ± 0.371
0.0ArgXaa: 0.0 ± 0.0
Ser
4.988SerAla: 4.988 ± 0.456
0.0SerCys: 0.0 ± 0.0
3.491SerAsp: 3.491 ± 0.565
2.494SerGlu: 2.494 ± 0.773
0.998SerPhe: 0.998 ± 0.833
8.479SerGly: 8.479 ± 0.831
0.0SerHis: 0.0 ± 0.0
2.993SerIle: 2.993 ± 0.968
0.0SerLys: 0.0 ± 0.0
1.995SerLeu: 1.995 ± 1.12
2.494SerMet: 2.494 ± 0.624
3.99SerAsn: 3.99 ± 0.754
5.985SerPro: 5.985 ± 0.618
5.985SerGln: 5.985 ± 1.04
4.489SerArg: 4.489 ± 1.139
5.486SerSer: 5.486 ± 0.974
8.978SerThr: 8.978 ± 1.999
1.995SerVal: 1.995 ± 0.371
0.998SerTrp: 0.998 ± 0.508
1.496SerTyr: 1.496 ± 0.155
0.0SerXaa: 0.0 ± 0.0
Thr
3.491ThrAla: 3.491 ± 1.312
2.993ThrCys: 2.993 ± 1.523
4.489ThrAsp: 4.489 ± 2.201
2.494ThrGlu: 2.494 ± 0.773
3.491ThrPhe: 3.491 ± 1.127
5.486ThrGly: 5.486 ± 0.892
0.998ThrHis: 0.998 ± 0.508
2.993ThrIle: 2.993 ± 0.309
2.993ThrLys: 2.993 ± 0.818
3.491ThrLeu: 3.491 ± 0.565
0.998ThrMet: 0.998 ± 0.833
1.995ThrAsn: 1.995 ± 0.641
3.99ThrPro: 3.99 ± 0.371
6.983ThrGln: 6.983 ± 3.027
3.99ThrArg: 3.99 ± 0.371
5.486ThrSer: 5.486 ± 0.741
3.491ThrThr: 3.491 ± 1.701
8.978ThrVal: 8.978 ± 0.994
2.993ThrTrp: 2.993 ± 0.309
2.494ThrTyr: 2.494 ± 0.624
0.0ThrXaa: 0.0 ± 0.0
Val
1.995ValAla: 1.995 ± 0.371
1.995ValCys: 1.995 ± 0.371
4.489ValAsp: 4.489 ± 0.852
4.489ValGlu: 4.489 ± 1.042
0.998ValPhe: 0.998 ± 0.837
2.494ValGly: 2.494 ± 0.624
2.494ValHis: 2.494 ± 0.624
2.494ValIle: 2.494 ± 0.708
4.988ValLys: 4.988 ± 1.248
0.998ValLeu: 0.998 ± 0.833
0.0ValMet: 0.0 ± 0.0
6.484ValAsn: 6.484 ± 0.562
2.993ValPro: 2.993 ± 0.818
1.995ValGln: 1.995 ± 0.371
0.499ValArg: 0.499 ± 0.417
4.988ValSer: 4.988 ± 1.248
2.494ValThr: 2.494 ± 0.624
0.0ValVal: 0.0 ± 0.0
0.998ValTrp: 0.998 ± 0.508
0.0ValTyr: 0.0 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.998TrpAla: 0.998 ± 0.508
0.998TrpCys: 0.998 ± 0.508
1.496TrpAsp: 1.496 ± 0.155
3.491TrpGlu: 3.491 ± 0.386
0.0TrpPhe: 0.0 ± 0.0
2.993TrpGly: 2.993 ± 1.186
0.0TrpHis: 0.0 ± 0.0
0.998TrpIle: 0.998 ± 0.833
0.0TrpLys: 0.0 ± 0.0
1.496TrpLeu: 1.496 ± 0.729
0.0TrpMet: 0.0 ± 0.0
3.99TrpAsn: 3.99 ± 2.03
0.499TrpPro: 0.499 ± 0.742
2.494TrpGln: 2.494 ± 0.624
1.995TrpArg: 1.995 ± 1.015
0.998TrpSer: 0.998 ± 0.508
0.499TrpThr: 0.499 ± 0.417
0.998TrpVal: 0.998 ± 0.508
1.995TrpTrp: 1.995 ± 0.394
1.496TrpTyr: 1.496 ± 0.818
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.494TyrAla: 2.494 ± 0.624
2.993TyrCys: 2.993 ± 0.798
0.998TyrAsp: 0.998 ± 0.508
0.998TyrGlu: 0.998 ± 0.508
2.993TyrPhe: 2.993 ± 0.798
1.496TyrGly: 1.496 ± 0.63
0.998TyrHis: 0.998 ± 0.396
1.995TyrIle: 1.995 ± 1.015
1.496TyrLys: 1.496 ± 0.731
2.993TyrLeu: 2.993 ± 1.523
3.491TyrMet: 3.491 ± 1.127
2.494TyrAsn: 2.494 ± 0.634
3.491TyrPro: 3.491 ± 1.127
1.995TyrGln: 1.995 ± 0.371
0.998TyrArg: 0.998 ± 0.508
4.489TyrSer: 4.489 ± 0.464
0.998TyrThr: 0.998 ± 0.833
1.496TyrVal: 1.496 ± 0.729
0.499TyrTrp: 0.499 ± 0.417
1.496TyrTyr: 1.496 ± 0.155
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (2006 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski