Caedimonas varicaedens

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Holosporales; Caedimonadaceae; Caedimonas

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1663 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K8MDQ4|A0A0K8MDQ4_9PROT 50S ribosomal protein L15 OS=Caedimonas varicaedens OX=1629334 GN=rplO PE=3 SV=1
MM1 pKa = 7.6LLAIDD6 pKa = 4.18ISAGGVSGDD15 pKa = 3.72NLVLQNFAVSSTADD29 pKa = 3.29PQGFYY34 pKa = 10.88AITTPGYY41 pKa = 7.32TALSIKK47 pKa = 10.71GLGTDD52 pKa = 4.03LTSGSNQLEE61 pKa = 4.27IKK63 pKa = 10.78GLDD66 pKa = 3.45THH68 pKa = 6.93AHH70 pKa = 5.13YY71 pKa = 10.83QDD73 pKa = 3.6IVDD76 pKa = 4.62NLHH79 pKa = 6.1LHH81 pKa = 6.22NNLFFTDD88 pKa = 3.76PDD90 pKa = 3.8HH91 pKa = 7.68AFGTRR96 pKa = 11.84TFSLQAFDD104 pKa = 4.86EE105 pKa = 4.97DD106 pKa = 4.3GQASATVSAPFIVTQMTAEE125 pKa = 4.08NVFTGTSGNDD135 pKa = 3.33YY136 pKa = 11.29LHH138 pKa = 6.54LTDD141 pKa = 5.79SSLTNHH147 pKa = 7.21TYY149 pKa = 10.74NAGDD153 pKa = 3.72GDD155 pKa = 5.81DD156 pKa = 4.67IIKK159 pKa = 10.73DD160 pKa = 3.62GNGPSTINGGAGHH173 pKa = 7.59DD174 pKa = 4.06LLLGQGGNDD183 pKa = 3.28ILNAGDD189 pKa = 4.93GNDD192 pKa = 3.67TLYY195 pKa = 11.26GGAGSDD201 pKa = 3.47ILIGGAGDD209 pKa = 4.3DD210 pKa = 4.15FLSGGLSGDD219 pKa = 3.71TLIGGTGKK227 pKa = 10.28DD228 pKa = 3.09VFYY231 pKa = 10.65FDD233 pKa = 4.48PSEE236 pKa = 4.37SGSLIDD242 pKa = 4.77TISDD246 pKa = 3.68FGKK249 pKa = 10.37IGSTDD254 pKa = 3.48PDD256 pKa = 4.48IIDD259 pKa = 3.12VSQYY263 pKa = 10.97LKK265 pKa = 10.76AAGYY269 pKa = 10.13IPGLNLIDD277 pKa = 3.83SFVHH281 pKa = 5.57IKK283 pKa = 9.87EE284 pKa = 4.23VSGVTTLSIDD294 pKa = 3.59PDD296 pKa = 4.02GAGPNPFTPLAVLQGIHH313 pKa = 6.34TNDD316 pKa = 3.17LVAVFDD322 pKa = 4.44GNYY325 pKa = 9.6HH326 pKa = 5.5LTVAVGG332 pKa = 3.22

Molecular weight: 34.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K8MFM7|A0A0K8MFM7_9PROT Recombination protein RecR OS=Caedimonas varicaedens OX=1629334 GN=recR PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.38RR3 pKa = 11.84TYY5 pKa = 10.3QPSQLVRR12 pKa = 11.84KK13 pKa = 9.03RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.44GFRR19 pKa = 11.84ARR21 pKa = 11.84MQTVGGRR28 pKa = 11.84RR29 pKa = 11.84VIAARR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.7GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1663

0

1663

466613

29

2586

280.6

31.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.448 ± 0.072

1.09 ± 0.025

4.833 ± 0.047

6.442 ± 0.068

4.688 ± 0.059

6.644 ± 0.06

2.468 ± 0.032

6.983 ± 0.063

6.293 ± 0.059

10.862 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.514 ± 0.031

3.681 ± 0.042

4.319 ± 0.046

4.265 ± 0.043

5.185 ± 0.053

6.633 ± 0.044

5.302 ± 0.038

6.087 ± 0.047

1.158 ± 0.025

3.103 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski