Amino acid dipepetide frequency for Faeces associated gemycircularvirus 3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.541AlaAla: 1.541 ± 1.126
0.0AlaCys: 0.0 ± 0.0
6.163AlaAsp: 6.163 ± 4.054
1.541AlaGlu: 1.541 ± 1.014
3.082AlaPhe: 3.082 ± 2.027
4.622AlaGly: 4.622 ± 0.901
0.0AlaHis: 0.0 ± 0.0
3.082AlaIle: 3.082 ± 2.027
1.541AlaLys: 1.541 ± 1.014
4.622AlaLeu: 4.622 ± 0.901
1.541AlaMet: 1.541 ± 1.126
4.622AlaAsn: 4.622 ± 0.901
3.082AlaPro: 3.082 ± 0.112
4.622AlaGln: 4.622 ± 1.238
7.704AlaArg: 7.704 ± 1.35
3.082AlaSer: 3.082 ± 0.112
3.082AlaThr: 3.082 ± 2.251
4.622AlaVal: 4.622 ± 0.901
1.541AlaTrp: 1.541 ± 1.014
4.622AlaTyr: 4.622 ± 1.238
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
3.082CysAsp: 3.082 ± 0.112
0.0CysGlu: 0.0 ± 0.0
1.541CysPhe: 1.541 ± 1.126
1.541CysGly: 1.541 ± 1.014
0.0CysHis: 0.0 ± 0.0
3.082CysIle: 3.082 ± 2.027
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
1.541CysGln: 1.541 ± 1.014
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
1.541CysThr: 1.541 ± 1.014
1.541CysVal: 1.541 ± 1.014
0.0CysTrp: 0.0 ± 0.0
1.541CysTyr: 1.541 ± 1.126
0.0CysXaa: 0.0 ± 0.0
Asp
4.622AspAla: 4.622 ± 0.901
0.0AspCys: 0.0 ± 0.0
4.622AspAsp: 4.622 ± 1.238
3.082AspGlu: 3.082 ± 0.112
1.541AspPhe: 1.541 ± 1.014
7.704AspGly: 7.704 ± 5.068
3.082AspHis: 3.082 ± 2.027
4.622AspIle: 4.622 ± 1.238
0.0AspLys: 0.0 ± 0.0
3.082AspLeu: 3.082 ± 2.251
1.541AspMet: 1.541 ± 1.014
0.0AspAsn: 0.0 ± 0.0
4.622AspPro: 4.622 ± 3.041
0.0AspGln: 0.0 ± 0.0
3.082AspArg: 3.082 ± 0.112
3.082AspSer: 3.082 ± 0.112
7.704AspThr: 7.704 ± 3.489
7.704AspVal: 7.704 ± 2.929
1.541AspTrp: 1.541 ± 1.126
4.622AspTyr: 4.622 ± 0.901
0.0AspXaa: 0.0 ± 0.0
Glu
0.0GluAla: 0.0 ± 0.0
1.541GluCys: 1.541 ± 1.014
1.541GluAsp: 1.541 ± 1.014
0.0GluGlu: 0.0 ± 0.0
4.622GluPhe: 4.622 ± 3.041
4.622GluGly: 4.622 ± 3.041
1.541GluHis: 1.541 ± 1.014
1.541GluIle: 1.541 ± 1.014
4.622GluLys: 4.622 ± 3.377
7.704GluLeu: 7.704 ± 5.068
1.541GluMet: 1.541 ± 0.75
1.541GluAsn: 1.541 ± 1.126
0.0GluPro: 0.0 ± 0.0
0.0GluGln: 0.0 ± 0.0
1.541GluArg: 1.541 ± 1.014
4.622GluSer: 4.622 ± 1.238
1.541GluThr: 1.541 ± 1.126
1.541GluVal: 1.541 ± 1.014
1.541GluTrp: 1.541 ± 1.014
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.541PheAla: 1.541 ± 1.014
1.541PheCys: 1.541 ± 1.014
3.082PheAsp: 3.082 ± 2.027
1.541PheGlu: 1.541 ± 1.014
1.541PhePhe: 1.541 ± 1.014
3.082PheGly: 3.082 ± 2.027
3.082PheHis: 3.082 ± 0.112
0.0PheIle: 0.0 ± 0.0
3.082PheLys: 3.082 ± 2.251
4.622PheLeu: 4.622 ± 0.901
0.0PheMet: 0.0 ± 0.0
1.541PheAsn: 1.541 ± 1.126
0.0PhePro: 0.0 ± 0.0
1.541PheGln: 1.541 ± 1.126
3.082PheArg: 3.082 ± 2.027
1.541PheSer: 1.541 ± 1.014
4.622PheThr: 4.622 ± 3.377
1.541PheVal: 1.541 ± 1.014
1.541PheTrp: 1.541 ± 1.014
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
7.704GlyAla: 7.704 ± 1.35
1.541GlyCys: 1.541 ± 1.014
9.245GlyAsp: 9.245 ± 0.336
3.082GlyGlu: 3.082 ± 2.027
0.0GlyPhe: 0.0 ± 0.0
13.867GlyGly: 13.867 ± 0.565
0.0GlyHis: 0.0 ± 0.0
3.082GlyIle: 3.082 ± 2.027
6.163GlyLys: 6.163 ± 4.054
6.163GlyLeu: 6.163 ± 0.224
3.082GlyMet: 3.082 ± 0.112
3.082GlyAsn: 3.082 ± 0.112
4.622GlyPro: 4.622 ± 0.901
4.622GlyGln: 4.622 ± 0.901
9.245GlyArg: 9.245 ± 1.803
4.622GlySer: 4.622 ± 3.377
7.704GlyThr: 7.704 ± 1.35
4.622GlyVal: 4.622 ± 1.238
1.541GlyTrp: 1.541 ± 1.014
1.541GlyTyr: 1.541 ± 1.014
0.0GlyXaa: 0.0 ± 0.0
His
4.622HisAla: 4.622 ± 3.041
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
1.541HisGlu: 1.541 ± 1.126
0.0HisPhe: 0.0 ± 0.0
1.541HisGly: 1.541 ± 1.014
0.0HisHis: 0.0 ± 0.0
1.541HisIle: 1.541 ± 1.014
0.0HisLys: 0.0 ± 0.0
3.082HisLeu: 3.082 ± 2.027
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
4.622HisPro: 4.622 ± 0.901
0.0HisGln: 0.0 ± 0.0
1.541HisArg: 1.541 ± 1.126
0.0HisSer: 0.0 ± 0.0
1.541HisThr: 1.541 ± 1.014
0.0HisVal: 0.0 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.622IleAla: 4.622 ± 1.238
1.541IleCys: 1.541 ± 1.126
1.541IleAsp: 1.541 ± 1.126
3.082IleGlu: 3.082 ± 2.027
7.704IlePhe: 7.704 ± 0.789
4.622IleGly: 4.622 ± 3.041
0.0IleHis: 0.0 ± 0.0
4.622IleIle: 4.622 ± 0.901
3.082IleLys: 3.082 ± 2.027
4.622IleLeu: 4.622 ± 0.901
0.0IleMet: 0.0 ± 0.0
1.541IleAsn: 1.541 ± 1.126
1.541IlePro: 1.541 ± 1.126
0.0IleGln: 0.0 ± 0.0
0.0IleArg: 0.0 ± 0.0
3.082IleSer: 3.082 ± 2.251
1.541IleThr: 1.541 ± 1.014
3.082IleVal: 3.082 ± 0.112
1.541IleTrp: 1.541 ± 1.014
1.541IleTyr: 1.541 ± 1.014
0.0IleXaa: 0.0 ± 0.0
Lys
3.082LysAla: 3.082 ± 0.112
1.541LysCys: 1.541 ± 1.014
1.541LysAsp: 1.541 ± 1.014
1.541LysGlu: 1.541 ± 1.014
0.0LysPhe: 0.0 ± 0.0
6.163LysGly: 6.163 ± 4.502
0.0LysHis: 0.0 ± 0.0
0.0LysIle: 0.0 ± 0.0
7.704LysLys: 7.704 ± 3.489
3.082LysLeu: 3.082 ± 0.112
1.541LysMet: 1.541 ± 1.777
1.541LysAsn: 1.541 ± 1.126
4.622LysPro: 4.622 ± 3.041
1.541LysGln: 1.541 ± 1.014
6.163LysArg: 6.163 ± 4.502
1.541LysSer: 1.541 ± 1.126
1.541LysThr: 1.541 ± 1.014
0.0LysVal: 0.0 ± 0.0
1.541LysTrp: 1.541 ± 1.014
1.541LysTyr: 1.541 ± 1.126
0.0LysXaa: 0.0 ± 0.0
Leu
4.622LeuAla: 4.622 ± 0.901
1.541LeuCys: 1.541 ± 1.014
6.163LeuAsp: 6.163 ± 4.054
4.622LeuGlu: 4.622 ± 1.238
0.0LeuPhe: 0.0 ± 0.0
6.163LeuGly: 6.163 ± 4.054
3.082LeuHis: 3.082 ± 2.027
0.0LeuIle: 0.0 ± 0.0
1.541LeuLys: 1.541 ± 1.126
3.082LeuLeu: 3.082 ± 0.112
1.541LeuMet: 1.541 ± 1.126
1.541LeuAsn: 1.541 ± 1.126
0.0LeuPro: 0.0 ± 0.0
0.0LeuGln: 0.0 ± 0.0
7.704LeuArg: 7.704 ± 0.789
6.163LeuSer: 6.163 ± 0.224
6.163LeuThr: 6.163 ± 2.363
4.622LeuVal: 4.622 ± 0.901
3.082LeuTrp: 3.082 ± 0.112
4.622LeuTyr: 4.622 ± 1.238
0.0LeuXaa: 0.0 ± 0.0
Met
1.541MetAla: 1.541 ± 1.126
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
1.541MetGlu: 1.541 ± 1.126
1.541MetPhe: 1.541 ± 1.126
3.082MetGly: 3.082 ± 0.112
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
1.541MetLeu: 1.541 ± 1.126
0.0MetMet: 0.0 ± 0.0
1.541MetAsn: 1.541 ± 1.126
3.082MetPro: 3.082 ± 2.027
0.0MetGln: 0.0 ± 0.0
3.082MetArg: 3.082 ± 0.112
3.082MetSer: 3.082 ± 0.112
0.0MetThr: 0.0 ± 0.0
1.541MetVal: 1.541 ± 1.014
0.0MetTrp: 0.0 ± 0.0
1.541MetTyr: 1.541 ± 1.126
0.0MetXaa: 0.0 ± 0.0
Asn
1.541AsnAla: 1.541 ± 1.126
1.541AsnCys: 1.541 ± 1.014
1.541AsnAsp: 1.541 ± 1.014
0.0AsnGlu: 0.0 ± 0.0
1.541AsnPhe: 1.541 ± 1.126
3.082AsnGly: 3.082 ± 2.251
1.541AsnHis: 1.541 ± 1.014
1.541AsnIle: 1.541 ± 1.126
1.541AsnLys: 1.541 ± 1.126
4.622AsnLeu: 4.622 ± 1.238
0.0AsnMet: 0.0 ± 0.0
0.0AsnAsn: 0.0 ± 0.0
1.541AsnPro: 1.541 ± 1.014
4.622AsnGln: 4.622 ± 3.377
1.541AsnArg: 1.541 ± 1.014
4.622AsnSer: 4.622 ± 1.238
3.082AsnThr: 3.082 ± 0.112
0.0AsnVal: 0.0 ± 0.0
1.541AsnTrp: 1.541 ± 1.014
3.082AsnTyr: 3.082 ± 0.112
0.0AsnXaa: 0.0 ± 0.0
Pro
4.622ProAla: 4.622 ± 0.901
0.0ProCys: 0.0 ± 0.0
3.082ProAsp: 3.082 ± 0.112
3.082ProGlu: 3.082 ± 2.027
1.541ProPhe: 1.541 ± 1.126
1.541ProGly: 1.541 ± 1.126
1.541ProHis: 1.541 ± 1.014
1.541ProIle: 1.541 ± 1.126
1.541ProLys: 1.541 ± 1.014
0.0ProLeu: 0.0 ± 0.0
1.541ProMet: 1.541 ± 1.126
4.622ProAsn: 4.622 ± 0.901
3.082ProPro: 3.082 ± 0.112
0.0ProGln: 0.0 ± 0.0
4.622ProArg: 4.622 ± 0.901
3.082ProSer: 3.082 ± 2.027
1.541ProThr: 1.541 ± 1.126
4.622ProVal: 4.622 ± 3.041
3.082ProTrp: 3.082 ± 0.112
3.082ProTyr: 3.082 ± 2.027
0.0ProXaa: 0.0 ± 0.0
Gln
3.082GlnAla: 3.082 ± 0.112
1.541GlnCys: 1.541 ± 1.014
0.0GlnAsp: 0.0 ± 0.0
1.541GlnGlu: 1.541 ± 1.014
0.0GlnPhe: 0.0 ± 0.0
1.541GlnGly: 1.541 ± 1.126
0.0GlnHis: 0.0 ± 0.0
1.541GlnIle: 1.541 ± 1.126
1.541GlnLys: 1.541 ± 1.126
1.541GlnLeu: 1.541 ± 1.126
3.082GlnMet: 3.082 ± 2.027
1.541GlnAsn: 1.541 ± 1.126
1.541GlnPro: 1.541 ± 1.126
1.541GlnGln: 1.541 ± 1.126
0.0GlnArg: 0.0 ± 0.0
3.082GlnSer: 3.082 ± 0.112
0.0GlnThr: 0.0 ± 0.0
1.541GlnVal: 1.541 ± 1.126
0.0GlnTrp: 0.0 ± 0.0
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
4.622ArgAla: 4.622 ± 3.041
1.541ArgCys: 1.541 ± 1.126
10.786ArgAsp: 10.786 ± 2.816
4.622ArgGlu: 4.622 ± 3.041
1.541ArgPhe: 1.541 ± 1.014
7.704ArgGly: 7.704 ± 0.789
1.541ArgHis: 1.541 ± 1.014
4.622ArgIle: 4.622 ± 3.377
4.622ArgLys: 4.622 ± 3.377
6.163ArgLeu: 6.163 ± 0.224
0.0ArgMet: 0.0 ± 0.0
0.0ArgAsn: 0.0 ± 0.0
6.163ArgPro: 6.163 ± 0.224
0.0ArgGln: 0.0 ± 0.0
13.867ArgArg: 13.867 ± 5.852
6.163ArgSer: 6.163 ± 1.915
7.704ArgThr: 7.704 ± 5.628
1.541ArgVal: 1.541 ± 1.126
0.0ArgTrp: 0.0 ± 0.0
3.082ArgTyr: 3.082 ± 2.027
0.0ArgXaa: 0.0 ± 0.0
Ser
1.541SerAla: 1.541 ± 1.126
0.0SerCys: 0.0 ± 0.0
3.082SerAsp: 3.082 ± 0.112
4.622SerGlu: 4.622 ± 1.238
1.541SerPhe: 1.541 ± 1.126
10.786SerGly: 10.786 ± 3.601
0.0SerHis: 0.0 ± 0.0
6.163SerIle: 6.163 ± 4.054
3.082SerLys: 3.082 ± 2.251
3.082SerLeu: 3.082 ± 0.112
1.541SerMet: 1.541 ± 1.014
7.704SerAsn: 7.704 ± 3.489
1.541SerPro: 1.541 ± 1.126
1.541SerGln: 1.541 ± 1.126
7.704SerArg: 7.704 ± 0.789
6.163SerSer: 6.163 ± 2.363
4.622SerThr: 4.622 ± 3.377
4.622SerVal: 4.622 ± 1.238
1.541SerTrp: 1.541 ± 1.014
4.622SerTyr: 4.622 ± 1.238
0.0SerXaa: 0.0 ± 0.0
Thr
4.622ThrAla: 4.622 ± 3.377
1.541ThrCys: 1.541 ± 1.126
1.541ThrAsp: 1.541 ± 1.126
1.541ThrGlu: 1.541 ± 1.014
1.541ThrPhe: 1.541 ± 1.126
6.163ThrGly: 6.163 ± 4.502
1.541ThrHis: 1.541 ± 1.014
4.622ThrIle: 4.622 ± 1.238
0.0ThrLys: 0.0 ± 0.0
4.622ThrLeu: 4.622 ± 0.901
1.541ThrMet: 1.541 ± 1.126
4.622ThrAsn: 4.622 ± 0.901
0.0ThrPro: 0.0 ± 0.0
0.0ThrGln: 0.0 ± 0.0
4.622ThrArg: 4.622 ± 1.238
12.327ThrSer: 12.327 ± 6.866
6.163ThrThr: 6.163 ± 4.502
4.622ThrVal: 4.622 ± 0.901
3.082ThrTrp: 3.082 ± 2.251
4.622ThrTyr: 4.622 ± 1.238
0.0ThrXaa: 0.0 ± 0.0
Val
3.082ValAla: 3.082 ± 2.027
0.0ValCys: 0.0 ± 0.0
3.082ValAsp: 3.082 ± 2.251
1.541ValGlu: 1.541 ± 1.014
3.082ValPhe: 3.082 ± 2.027
4.622ValGly: 4.622 ± 0.901
0.0ValHis: 0.0 ± 0.0
7.704ValIle: 7.704 ± 0.789
4.622ValLys: 4.622 ± 1.238
0.0ValLeu: 0.0 ± 0.0
1.541ValMet: 1.541 ± 1.126
1.541ValAsn: 1.541 ± 1.014
7.704ValPro: 7.704 ± 0.789
1.541ValGln: 1.541 ± 1.014
0.0ValArg: 0.0 ± 0.0
3.082ValSer: 3.082 ± 0.112
3.082ValThr: 3.082 ± 0.112
4.622ValVal: 4.622 ± 0.901
3.082ValTrp: 3.082 ± 0.112
3.082ValTyr: 3.082 ± 0.112
0.0ValXaa: 0.0 ± 0.0
Trp
1.541TrpAla: 1.541 ± 1.014
0.0TrpCys: 0.0 ± 0.0
1.541TrpAsp: 1.541 ± 1.126
0.0TrpGlu: 0.0 ± 0.0
3.082TrpPhe: 3.082 ± 0.112
1.541TrpGly: 1.541 ± 1.014
1.541TrpHis: 1.541 ± 1.126
0.0TrpIle: 0.0 ± 0.0
3.082TrpLys: 3.082 ± 2.027
3.082TrpLeu: 3.082 ± 2.027
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
3.082TrpArg: 3.082 ± 2.027
3.082TrpSer: 3.082 ± 0.112
4.622TrpThr: 4.622 ± 1.238
1.541TrpVal: 1.541 ± 1.126
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
6.163TyrAla: 6.163 ± 4.054
0.0TyrCys: 0.0 ± 0.0
4.622TyrAsp: 4.622 ± 1.238
3.082TyrGlu: 3.082 ± 2.027
3.082TyrPhe: 3.082 ± 2.027
1.541TyrGly: 1.541 ± 1.014
1.541TyrHis: 1.541 ± 1.126
0.0TyrIle: 0.0 ± 0.0
0.0TyrLys: 0.0 ± 0.0
1.541TyrLeu: 1.541 ± 1.126
1.541TyrMet: 1.541 ± 1.126
1.541TyrAsn: 1.541 ± 1.014
0.0TyrPro: 0.0 ± 0.0
1.541TyrGln: 1.541 ± 1.126
7.704TyrArg: 7.704 ± 1.35
3.082TyrSer: 3.082 ± 2.251
1.541TyrThr: 1.541 ± 1.014
3.082TyrVal: 3.082 ± 2.251
1.541TyrTrp: 1.541 ± 1.126
3.082TyrTyr: 3.082 ± 2.251
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (650 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski