Oryctes rhinoceros nudivirus (isolate Oryctes rhinoceros/Malaysia/Ma07/2007) (OrNV)

Taxonomy: Viruses; Nudiviridae; Alphanudivirus; Oryctes rhinoceros nudivirus

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 138 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B7SVG0|B7SVG0_ORNVM Uncharacterized protein OS=Oryctes rhinoceros nudivirus (isolate Oryctes rhinoceros/Malaysia/Ma07/2007) OX=1046081 PE=4 SV=1
MM1 pKa = 8.09DD2 pKa = 5.6EE3 pKa = 4.57YY4 pKa = 11.53DD5 pKa = 3.63EE6 pKa = 6.0CDD8 pKa = 3.39VKK10 pKa = 11.23QPDD13 pKa = 5.15DD14 pKa = 3.77MDD16 pKa = 4.2EE17 pKa = 4.64DD18 pKa = 4.44EE19 pKa = 4.74PTIDD23 pKa = 5.53DD24 pKa = 4.49DD25 pKa = 5.24EE26 pKa = 6.32EE27 pKa = 5.8DD28 pKa = 3.56VDD30 pKa = 4.63EE31 pKa = 5.58PISDD35 pKa = 3.82VVVEE39 pKa = 4.35YY40 pKa = 11.19GDD42 pKa = 5.77DD43 pKa = 3.73EE44 pKa = 7.09DD45 pKa = 6.78DD46 pKa = 5.45DD47 pKa = 5.39VVDD50 pKa = 5.63DD51 pKa = 6.56DD52 pKa = 5.15EE53 pKa = 6.26AEE55 pKa = 4.49CDD57 pKa = 4.87DD58 pKa = 4.68EE59 pKa = 5.54VCVPDD64 pKa = 4.56GDD66 pKa = 4.43EE67 pKa = 4.09PCKK70 pKa = 10.48FDD72 pKa = 6.84DD73 pKa = 3.71YY74 pKa = 11.64TLVNNCEE81 pKa = 4.17STNMVDD87 pKa = 2.78VWQISTDD94 pKa = 3.79FTRR97 pKa = 11.84NDD99 pKa = 4.28LLTKK103 pKa = 10.33AKK105 pKa = 10.25PGTWLYY111 pKa = 11.62NKK113 pKa = 9.33ILHH116 pKa = 5.52STPMLASSILTSHH129 pKa = 6.78LNVLSVHH136 pKa = 5.83GVYY139 pKa = 10.54LAPGNVTASTFYY151 pKa = 10.71YY152 pKa = 10.0KK153 pKa = 10.58KK154 pKa = 10.51KK155 pKa = 10.76

Molecular weight: 17.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B7SV44|B7SV44_ORNVM Guanylate kinase-like protein OS=Oryctes rhinoceros nudivirus (isolate Oryctes rhinoceros/Malaysia/Ma07/2007) OX=1046081 PE=4 SV=1
MM1 pKa = 7.23NVSITNIQEE10 pKa = 4.62FINSIHH16 pKa = 7.03DD17 pKa = 3.96FIIEE21 pKa = 4.04TFEE24 pKa = 4.1IIPRR28 pKa = 11.84DD29 pKa = 3.9FEE31 pKa = 4.44TKK33 pKa = 10.38LLVGNRR39 pKa = 11.84SLVWHH44 pKa = 6.73SDD46 pKa = 2.84VGKK49 pKa = 10.06IEE51 pKa = 4.9EE52 pKa = 4.72FICPKK57 pKa = 9.89FKK59 pKa = 10.54HH60 pKa = 5.81YY61 pKa = 11.08LHH63 pKa = 6.32VHH65 pKa = 6.03EE66 pKa = 5.16KK67 pKa = 10.85HH68 pKa = 6.44NADD71 pKa = 3.77EE72 pKa = 5.12NLTICCNEE80 pKa = 3.48VDD82 pKa = 4.95IIALKK87 pKa = 10.27YY88 pKa = 10.91LNDD91 pKa = 4.34SIFGTFKK98 pKa = 11.15NKK100 pKa = 9.98IISSLHH106 pKa = 4.99SWLPAATYY114 pKa = 7.77QHH116 pKa = 5.47VRR118 pKa = 11.84VVVRR122 pKa = 11.84SNTTYY127 pKa = 9.76INSYY131 pKa = 10.23FEE133 pKa = 3.96PSYY136 pKa = 11.06LFNLLHH142 pKa = 6.55YY143 pKa = 9.17IDD145 pKa = 4.62HH146 pKa = 6.51SRR148 pKa = 11.84DD149 pKa = 3.17IIYY152 pKa = 8.99TYY154 pKa = 9.46YY155 pKa = 10.41HH156 pKa = 6.59SNIVLYY162 pKa = 10.33EE163 pKa = 4.08SYY165 pKa = 11.06NLEE168 pKa = 4.28GINNKK173 pKa = 10.04RR174 pKa = 11.84IMVRR178 pKa = 11.84ARR180 pKa = 11.84SRR182 pKa = 11.84SPGRR186 pKa = 11.84AKK188 pKa = 10.48SPSRR192 pKa = 11.84ARR194 pKa = 11.84SGRR197 pKa = 11.84ARR199 pKa = 11.84SPAKK203 pKa = 9.75ASKK206 pKa = 9.53RR207 pKa = 11.84QRR209 pKa = 11.84SRR211 pKa = 11.84SRR213 pKa = 11.84SRR215 pKa = 11.84SRR217 pKa = 11.84SRR219 pKa = 11.84SASRR223 pKa = 11.84TARR226 pKa = 11.84RR227 pKa = 11.84ASSPRR232 pKa = 11.84RR233 pKa = 11.84QSSTTSRR240 pKa = 11.84SRR242 pKa = 11.84RR243 pKa = 3.56

Molecular weight: 28.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

138

0

138

37445

50

1280

271.3

30.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.186 ± 0.144

2.201 ± 0.11

6.391 ± 0.222

5.053 ± 0.15

4.439 ± 0.151

3.629 ± 0.141

2.171 ± 0.103

8.108 ± 0.134

6.401 ± 0.174

8.685 ± 0.19

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.615 ± 0.095

6.134 ± 0.128

4.326 ± 0.144

3.328 ± 0.149

4.473 ± 0.158

8.367 ± 0.19

6.842 ± 0.225

5.958 ± 0.146

0.708 ± 0.051

4.986 ± 0.167
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski