Thioflexothrix psekupsii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichales incertae sedis; Thioflexothrix

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3187 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A251XA25|A0A251XA25_9GAMM Uncharacterized protein OS=Thioflexothrix psekupsii OX=1570016 GN=TPSD3_09580 PE=4 SV=1
MM1 pKa = 7.52SLQNSLDD8 pKa = 3.38GLTEE12 pKa = 3.63EE13 pKa = 4.03LRR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84RR19 pKa = 11.84EE20 pKa = 3.79AQEE23 pKa = 5.27SIDD26 pKa = 4.06SCCDD30 pKa = 3.13TSDD33 pKa = 4.56DD34 pKa = 3.52LHH36 pKa = 7.72GFYY39 pKa = 10.82GVDD42 pKa = 3.2SDD44 pKa = 6.35DD45 pKa = 3.39IVSYY49 pKa = 11.04DD50 pKa = 3.98FNHH53 pKa = 7.06HH54 pKa = 7.11ANDD57 pKa = 3.74QYY59 pKa = 11.5EE60 pKa = 4.52PPHH63 pKa = 8.16SDD65 pKa = 3.71DD66 pKa = 3.79FCDD69 pKa = 5.28DD70 pKa = 3.48VSSDD74 pKa = 3.21

Molecular weight: 8.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A251X694|A0A251X694_9GAMM Uncharacterized protein OS=Thioflexothrix psekupsii OX=1570016 GN=TPSD3_10880 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.5GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 9.02TRR25 pKa = 11.84GGRR28 pKa = 11.84AVIQARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.51GRR39 pKa = 11.84VRR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3187

0

3187

1126285

21

4445

353.4

39.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.509 ± 0.052

1.018 ± 0.015

5.16 ± 0.04

6.296 ± 0.048

4.116 ± 0.031

6.166 ± 0.053

2.68 ± 0.027

6.294 ± 0.037

4.414 ± 0.042

11.541 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.249 ± 0.019

4.045 ± 0.032

4.371 ± 0.033

5.507 ± 0.043

5.355 ± 0.032

5.792 ± 0.036

5.481 ± 0.047

6.445 ± 0.046

1.366 ± 0.02

3.196 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski