Amino acid dipepetide frequency for Rosellinia necatrix partitivirus 8

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.41AlaAla: 6.41 ± 2.863
0.0AlaCys: 0.0 ± 0.0
3.561AlaAsp: 3.561 ± 0.689
3.561AlaGlu: 3.561 ± 0.325
5.698AlaPhe: 5.698 ± 0.292
2.137AlaGly: 2.137 ± 1.63
2.849AlaHis: 2.849 ± 0.146
2.849AlaIle: 2.849 ± 1.16
0.712AlaLys: 0.712 ± 0.47
6.41AlaLeu: 6.41 ± 1.849
1.425AlaMet: 1.425 ± 1.087
4.986AlaAsn: 4.986 ± 2.79
6.41AlaPro: 6.41 ± 4.89
2.849AlaGln: 2.849 ± 0.868
7.835AlaArg: 7.835 ± 1.922
11.396AlaSer: 11.396 ± 4.639
4.274AlaThr: 4.274 ± 3.26
0.712AlaVal: 0.712 ± 0.543
0.0AlaTrp: 0.0 ± 0.0
2.137AlaTyr: 2.137 ± 0.398
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.712CysCys: 0.712 ± 0.47
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.712CysGly: 0.712 ± 0.47
0.712CysHis: 0.712 ± 0.47
0.0CysIle: 0.0 ± 0.0
0.712CysLys: 0.712 ± 0.47
1.425CysLeu: 1.425 ± 0.941
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.712CysArg: 0.712 ± 0.47
0.0CysSer: 0.0 ± 0.0
0.712CysThr: 0.712 ± 0.47
1.425CysVal: 1.425 ± 0.941
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.986AspAla: 4.986 ± 0.762
0.712AspCys: 0.712 ± 0.47
2.137AspAsp: 2.137 ± 0.398
0.712AspGlu: 0.712 ± 0.47
6.41AspPhe: 6.41 ± 0.179
2.849AspGly: 2.849 ± 0.146
0.712AspHis: 0.712 ± 0.47
3.561AspIle: 3.561 ± 0.325
2.849AspLys: 2.849 ± 0.868
3.561AspLeu: 3.561 ± 0.325
1.425AspMet: 1.425 ± 0.073
1.425AspAsn: 1.425 ± 0.941
4.986AspPro: 4.986 ± 1.265
2.137AspGln: 2.137 ± 0.616
2.849AspArg: 2.849 ± 1.882
2.849AspSer: 2.849 ± 1.16
2.849AspThr: 2.849 ± 0.868
2.137AspVal: 2.137 ± 0.616
1.425AspTrp: 1.425 ± 0.941
2.849AspTyr: 2.849 ± 0.868
0.0AspXaa: 0.0 ± 0.0
Glu
0.712GluAla: 0.712 ± 0.47
0.712GluCys: 0.712 ± 0.47
0.712GluAsp: 0.712 ± 0.47
1.425GluGlu: 1.425 ± 0.941
4.986GluPhe: 4.986 ± 2.279
0.0GluGly: 0.0 ± 0.0
0.712GluHis: 0.712 ± 0.543
1.425GluIle: 1.425 ± 0.073
1.425GluLys: 1.425 ± 0.941
1.425GluLeu: 1.425 ± 0.073
0.712GluMet: 0.712 ± 0.47
2.137GluAsn: 2.137 ± 0.398
0.0GluPro: 0.0 ± 0.0
0.712GluGln: 0.712 ± 0.47
6.41GluArg: 6.41 ± 2.206
1.425GluSer: 1.425 ± 0.073
5.698GluThr: 5.698 ± 2.75
0.712GluVal: 0.712 ± 0.47
2.137GluTrp: 2.137 ± 0.398
2.137GluTyr: 2.137 ± 1.411
0.0GluXaa: 0.0 ± 0.0
Phe
5.698PheAla: 5.698 ± 0.722
0.712PheCys: 0.712 ± 0.47
4.274PheAsp: 4.274 ± 0.795
0.712PheGlu: 0.712 ± 0.47
4.986PhePhe: 4.986 ± 0.762
5.698PheGly: 5.698 ± 0.292
4.274PheHis: 4.274 ± 0.219
3.561PheIle: 3.561 ± 2.352
0.712PheLys: 0.712 ± 0.47
11.396PheLeu: 11.396 ± 1.444
2.137PheMet: 2.137 ± 0.297
3.561PheAsn: 3.561 ± 0.325
6.41PhePro: 6.41 ± 0.179
0.712PheGln: 0.712 ± 0.47
5.698PheArg: 5.698 ± 0.722
2.849PheSer: 2.849 ± 0.146
2.137PheThr: 2.137 ± 1.411
0.0PheVal: 0.0 ± 0.0
0.712PheTrp: 0.712 ± 0.47
0.712PheTyr: 0.712 ± 0.543
0.0PheXaa: 0.0 ± 0.0
Gly
3.561GlyAla: 3.561 ± 2.717
0.0GlyCys: 0.0 ± 0.0
1.425GlyAsp: 1.425 ± 0.073
0.0GlyGlu: 0.0 ± 0.0
2.137GlyPhe: 2.137 ± 0.398
0.712GlyGly: 0.712 ± 0.47
0.712GlyHis: 0.712 ± 0.47
2.849GlyIle: 2.849 ± 1.16
2.137GlyLys: 2.137 ± 0.398
4.986GlyLeu: 4.986 ± 0.762
1.425GlyMet: 1.425 ± 0.941
1.425GlyAsn: 1.425 ± 0.073
2.137GlyPro: 2.137 ± 0.616
2.137GlyGln: 2.137 ± 0.616
2.137GlyArg: 2.137 ± 1.63
4.274GlySer: 4.274 ± 0.219
1.425GlyThr: 1.425 ± 1.087
1.425GlyVal: 1.425 ± 0.941
0.0GlyTrp: 0.0 ± 0.0
2.137GlyTyr: 2.137 ± 0.398
0.0GlyXaa: 0.0 ± 0.0
His
3.561HisAla: 3.561 ± 0.689
0.0HisCys: 0.0 ± 0.0
3.561HisAsp: 3.561 ± 1.703
2.849HisGlu: 2.849 ± 0.868
2.137HisPhe: 2.137 ± 0.398
4.274HisGly: 4.274 ± 2.823
0.712HisHis: 0.712 ± 0.47
2.849HisIle: 2.849 ± 0.868
0.712HisLys: 0.712 ± 0.47
2.849HisLeu: 2.849 ± 0.868
0.712HisMet: 0.712 ± 0.543
2.137HisAsn: 2.137 ± 0.616
4.274HisPro: 4.274 ± 0.795
0.0HisGln: 0.0 ± 0.0
0.0HisArg: 0.0 ± 0.0
1.425HisSer: 1.425 ± 0.941
2.137HisThr: 2.137 ± 0.616
1.425HisVal: 1.425 ± 1.087
0.0HisTrp: 0.0 ± 0.0
0.712HisTyr: 0.712 ± 0.543
0.0HisXaa: 0.0 ± 0.0
Ile
3.561IleAla: 3.561 ± 0.689
0.0IleCys: 0.0 ± 0.0
2.137IleAsp: 2.137 ± 0.398
4.274IleGlu: 4.274 ± 1.809
3.561IlePhe: 3.561 ± 0.325
2.849IleGly: 2.849 ± 1.16
4.274IleHis: 4.274 ± 1.809
2.137IleIle: 2.137 ± 1.411
1.425IleLys: 1.425 ± 0.941
4.986IleLeu: 4.986 ± 1.265
2.137IleMet: 2.137 ± 0.616
2.849IleAsn: 2.849 ± 0.146
3.561IlePro: 3.561 ± 0.689
2.849IleGln: 2.849 ± 0.146
4.274IleArg: 4.274 ± 0.795
4.986IleSer: 4.986 ± 1.265
7.123IleThr: 7.123 ± 0.365
4.274IleVal: 4.274 ± 0.219
0.712IleTrp: 0.712 ± 0.543
1.425IleTyr: 1.425 ± 0.073
0.0IleXaa: 0.0 ± 0.0
Lys
0.0LysAla: 0.0 ± 0.0
0.0LysCys: 0.0 ± 0.0
0.712LysAsp: 0.712 ± 0.47
0.712LysGlu: 0.712 ± 0.47
1.425LysPhe: 1.425 ± 0.073
0.712LysGly: 0.712 ± 0.47
0.712LysHis: 0.712 ± 0.47
4.274LysIle: 4.274 ± 2.823
1.425LysLys: 1.425 ± 0.941
2.137LysLeu: 2.137 ± 0.398
1.425LysMet: 1.425 ± 0.941
0.712LysAsn: 0.712 ± 0.47
0.712LysPro: 0.712 ± 0.47
0.0LysGln: 0.0 ± 0.0
1.425LysArg: 1.425 ± 0.941
2.137LysSer: 2.137 ± 1.411
1.425LysThr: 1.425 ± 0.073
0.0LysVal: 0.0 ± 0.0
1.425LysTrp: 1.425 ± 0.941
1.425LysTyr: 1.425 ± 0.941
0.0LysXaa: 0.0 ± 0.0
Leu
10.684LeuAla: 10.684 ± 0.04
0.712LeuCys: 0.712 ± 0.47
7.835LeuAsp: 7.835 ± 1.12
6.41LeuGlu: 6.41 ± 3.22
7.835LeuPhe: 7.835 ± 0.908
2.137LeuGly: 2.137 ± 0.398
4.274LeuHis: 4.274 ± 0.795
4.986LeuIle: 4.986 ± 2.279
2.849LeuLys: 2.849 ± 1.882
7.835LeuLeu: 7.835 ± 0.106
0.712LeuMet: 0.712 ± 0.851
4.986LeuAsn: 4.986 ± 1.265
8.547LeuPro: 8.547 ± 2.465
2.849LeuGln: 2.849 ± 1.16
6.41LeuArg: 6.41 ± 2.863
5.698LeuSer: 5.698 ± 0.722
4.986LeuThr: 4.986 ± 0.252
3.561LeuVal: 3.561 ± 0.325
0.0LeuTrp: 0.0 ± 0.0
2.849LeuTyr: 2.849 ± 1.16
0.0LeuXaa: 0.0 ± 0.0
Met
1.425MetAla: 1.425 ± 1.087
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
0.0MetGlu: 0.0 ± 0.0
0.712MetPhe: 0.712 ± 0.47
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.712MetIle: 0.712 ± 0.543
0.0MetLys: 0.0 ± 0.0
4.274MetLeu: 4.274 ± 0.219
0.0MetMet: 0.0 ± 0.0
1.425MetAsn: 1.425 ± 0.073
2.137MetPro: 2.137 ± 1.411
2.137MetGln: 2.137 ± 1.63
2.137MetArg: 2.137 ± 0.398
2.137MetSer: 2.137 ± 0.616
1.425MetThr: 1.425 ± 0.073
2.849MetVal: 2.849 ± 0.868
0.0MetTrp: 0.0 ± 0.0
2.137MetTyr: 2.137 ± 0.616
0.0MetXaa: 0.0 ± 0.0
Asn
0.712AsnAla: 0.712 ± 0.543
0.0AsnCys: 0.0 ± 0.0
2.137AsnAsp: 2.137 ± 0.398
3.561AsnGlu: 3.561 ± 1.338
2.849AsnPhe: 2.849 ± 0.868
2.137AsnGly: 2.137 ± 0.616
0.0AsnHis: 0.0 ± 0.0
7.123AsnIle: 7.123 ± 1.378
0.712AsnLys: 0.712 ± 0.47
6.41AsnLeu: 6.41 ± 0.179
2.137AsnMet: 2.137 ± 0.616
2.849AsnAsn: 2.849 ± 2.174
3.561AsnPro: 3.561 ± 0.689
1.425AsnGln: 1.425 ± 1.087
0.712AsnArg: 0.712 ± 0.47
4.274AsnSer: 4.274 ± 3.26
7.123AsnThr: 7.123 ± 3.406
4.274AsnVal: 4.274 ± 0.795
0.712AsnTrp: 0.712 ± 0.543
2.137AsnTyr: 2.137 ± 0.616
0.0AsnXaa: 0.0 ± 0.0
Pro
9.972ProAla: 9.972 ± 4.566
0.0ProCys: 0.0 ± 0.0
9.259ProAsp: 9.259 ± 1.047
2.137ProGlu: 2.137 ± 1.411
1.425ProPhe: 1.425 ± 0.941
1.425ProGly: 1.425 ± 1.087
1.425ProHis: 1.425 ± 0.073
2.849ProIle: 2.849 ± 0.146
0.712ProLys: 0.712 ± 0.47
4.274ProLeu: 4.274 ± 0.795
0.712ProMet: 0.712 ± 0.543
2.137ProAsn: 2.137 ± 1.63
4.986ProPro: 4.986 ± 2.279
4.274ProGln: 4.274 ± 1.809
0.712ProArg: 0.712 ± 0.543
9.972ProSer: 9.972 ± 0.503
9.259ProThr: 9.259 ± 0.033
7.123ProVal: 7.123 ± 1.378
0.0ProTrp: 0.0 ± 0.0
5.698ProTyr: 5.698 ± 0.292
0.0ProXaa: 0.0 ± 0.0
Gln
2.137GlnAla: 2.137 ± 0.616
0.712GlnCys: 0.712 ± 0.47
2.137GlnAsp: 2.137 ± 0.398
1.425GlnGlu: 1.425 ± 0.073
2.137GlnPhe: 2.137 ± 0.616
0.0GlnGly: 0.0 ± 0.0
2.137GlnHis: 2.137 ± 0.616
4.274GlnIle: 4.274 ± 1.233
0.0GlnLys: 0.0 ± 0.0
3.561GlnLeu: 3.561 ± 0.325
0.712GlnMet: 0.712 ± 0.47
1.425GlnAsn: 1.425 ± 1.087
2.137GlnPro: 2.137 ± 0.398
1.425GlnGln: 1.425 ± 0.941
2.137GlnArg: 2.137 ± 0.398
1.425GlnSer: 1.425 ± 0.941
0.712GlnThr: 0.712 ± 0.543
0.712GlnVal: 0.712 ± 0.543
0.712GlnTrp: 0.712 ± 0.543
2.137GlnTyr: 2.137 ± 0.398
0.0GlnXaa: 0.0 ± 0.0
Arg
3.561ArgAla: 3.561 ± 1.703
0.0ArgCys: 0.0 ± 0.0
2.849ArgAsp: 2.849 ± 0.868
0.712ArgGlu: 0.712 ± 0.47
4.986ArgPhe: 4.986 ± 0.252
1.425ArgGly: 1.425 ± 0.073
4.274ArgHis: 4.274 ± 0.219
4.274ArgIle: 4.274 ± 0.219
0.0ArgLys: 0.0 ± 0.0
4.986ArgLeu: 4.986 ± 0.762
0.712ArgMet: 0.712 ± 0.543
3.561ArgAsn: 3.561 ± 0.325
6.41ArgPro: 6.41 ± 2.206
1.425ArgGln: 1.425 ± 0.941
4.986ArgArg: 4.986 ± 2.279
4.986ArgSer: 4.986 ± 0.762
2.849ArgThr: 2.849 ± 0.146
0.712ArgVal: 0.712 ± 0.47
0.712ArgTrp: 0.712 ± 0.543
4.986ArgTyr: 4.986 ± 1.265
0.0ArgXaa: 0.0 ± 0.0
Ser
8.547SerAla: 8.547 ± 5.507
0.712SerCys: 0.712 ± 0.47
4.274SerAsp: 4.274 ± 1.809
0.712SerGlu: 0.712 ± 0.47
4.274SerPhe: 4.274 ± 1.809
5.698SerGly: 5.698 ± 2.319
4.986SerHis: 4.986 ± 0.762
4.274SerIle: 4.274 ± 0.795
4.274SerLys: 4.274 ± 1.809
8.547SerLeu: 8.547 ± 0.576
2.849SerMet: 2.849 ± 0.868
4.986SerAsn: 4.986 ± 0.762
3.561SerPro: 3.561 ± 0.325
3.561SerGln: 3.561 ± 1.703
4.986SerArg: 4.986 ± 0.762
5.698SerSer: 5.698 ± 3.333
5.698SerThr: 5.698 ± 1.306
4.274SerVal: 4.274 ± 1.233
0.712SerTrp: 0.712 ± 0.543
2.849SerTyr: 2.849 ± 0.868
0.0SerXaa: 0.0 ± 0.0
Thr
2.137ThrAla: 2.137 ± 1.63
1.425ThrCys: 1.425 ± 0.941
4.986ThrAsp: 4.986 ± 0.252
2.849ThrGlu: 2.849 ± 0.146
5.698ThrPhe: 5.698 ± 0.722
3.561ThrGly: 3.561 ± 1.703
0.0ThrHis: 0.0 ± 0.0
3.561ThrIle: 3.561 ± 0.689
1.425ThrLys: 1.425 ± 0.941
7.123ThrLeu: 7.123 ± 0.649
0.0ThrMet: 0.0 ± 0.0
4.274ThrAsn: 4.274 ± 1.233
7.123ThrPro: 7.123 ± 0.365
2.137ThrGln: 2.137 ± 0.398
3.561ThrArg: 3.561 ± 0.325
8.547ThrSer: 8.547 ± 3.479
3.561ThrThr: 3.561 ± 0.689
6.41ThrVal: 6.41 ± 1.849
2.137ThrTrp: 2.137 ± 0.398
0.0ThrTyr: 0.0 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.274ValAla: 4.274 ± 1.233
0.0ValCys: 0.0 ± 0.0
0.712ValAsp: 0.712 ± 0.47
0.0ValGlu: 0.0 ± 0.0
4.274ValPhe: 4.274 ± 1.809
0.0ValGly: 0.0 ± 0.0
0.0ValHis: 0.0 ± 0.0
2.849ValIle: 2.849 ± 0.146
0.0ValLys: 0.0 ± 0.0
4.986ValLeu: 4.986 ± 0.252
1.425ValMet: 1.425 ± 0.073
6.41ValAsn: 6.41 ± 2.863
9.259ValPro: 9.259 ± 0.981
0.712ValGln: 0.712 ± 0.543
0.712ValArg: 0.712 ± 0.47
4.274ValSer: 4.274 ± 0.795
3.561ValThr: 3.561 ± 0.689
0.712ValVal: 0.712 ± 0.543
0.712ValTrp: 0.712 ± 0.543
2.849ValTyr: 2.849 ± 0.146
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.712TrpGlu: 0.712 ± 0.47
0.712TrpPhe: 0.712 ± 0.47
0.0TrpGly: 0.0 ± 0.0
0.712TrpHis: 0.712 ± 0.47
1.425TrpIle: 1.425 ± 0.073
0.712TrpLys: 0.712 ± 0.47
2.137TrpLeu: 2.137 ± 0.616
0.0TrpMet: 0.0 ± 0.0
2.137TrpAsn: 2.137 ± 0.616
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
1.425TrpSer: 1.425 ± 0.073
0.712TrpThr: 0.712 ± 0.543
0.712TrpVal: 0.712 ± 0.543
0.0TrpTrp: 0.0 ± 0.0
0.712TrpTyr: 0.712 ± 0.47
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.274TyrAla: 4.274 ± 2.246
0.712TyrCys: 0.712 ± 0.47
0.712TyrAsp: 0.712 ± 0.47
2.849TyrGlu: 2.849 ± 0.868
0.712TyrPhe: 0.712 ± 0.47
0.712TyrGly: 0.712 ± 0.543
2.849TyrHis: 2.849 ± 0.146
3.561TyrIle: 3.561 ± 1.338
0.0TyrLys: 0.0 ± 0.0
3.561TyrLeu: 3.561 ± 0.689
2.137TyrMet: 2.137 ± 0.616
1.425TyrAsn: 1.425 ± 0.073
2.137TyrPro: 2.137 ± 0.398
0.712TyrGln: 0.712 ± 0.47
0.712TyrArg: 0.712 ± 0.47
5.698TyrSer: 5.698 ± 2.75
2.849TyrThr: 2.849 ± 0.146
4.274TyrVal: 4.274 ± 0.219
0.0TyrTrp: 0.0 ± 0.0
2.137TyrTyr: 2.137 ± 0.398
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1405 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski