Synechococcus phage S-MbCM100

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Acionnavirus; Synechococcus virus SMbCM100

Average proteome isoelectric point is 5.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 210 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V5UTV0|V5UTV0_9CAUD Precursor of head vertex protein OS=Synechococcus phage S-MbCM100 OX=1340812 GN=S-MbCM100_112 PE=4 SV=1
MM1 pKa = 7.63LIALAVLVTVGAFILGIVVSWLAKK25 pKa = 10.42GYY27 pKa = 10.55VEE29 pKa = 6.23DD30 pKa = 4.57YY31 pKa = 10.73IEE33 pKa = 3.99NAAYY37 pKa = 10.08SKK39 pKa = 10.91SVTHH43 pKa = 6.95PEE45 pKa = 3.96MFDD48 pKa = 3.29EE49 pKa = 4.86EE50 pKa = 5.12GNMIRR55 pKa = 11.84DD56 pKa = 3.59EE57 pKa = 4.88LIYY60 pKa = 10.22IRR62 pKa = 11.84PDD64 pKa = 2.74IQYY67 pKa = 10.35WDD69 pKa = 5.0DD70 pKa = 4.62LPDD73 pKa = 5.36DD74 pKa = 4.69EE75 pKa = 7.73DD76 pKa = 4.15DD77 pKa = 3.69

Molecular weight: 8.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V5UU11|V5UU11_9CAUD Photosystem II OS=Synechococcus phage S-MbCM100 OX=1340812 GN=S-MbCM100_192 PE=3 SV=1
MM1 pKa = 7.13NTLQMVKK8 pKa = 10.33KK9 pKa = 10.15QINKK13 pKa = 9.94ASALHH18 pKa = 5.9NAQISHH24 pKa = 5.52TSYY27 pKa = 10.84RR28 pKa = 11.84GVEE31 pKa = 4.01YY32 pKa = 8.83NTRR35 pKa = 11.84CVEE38 pKa = 4.18SKK40 pKa = 8.33EE41 pKa = 4.27THH43 pKa = 5.12GTFCYY48 pKa = 9.92RR49 pKa = 11.84GRR51 pKa = 11.84TYY53 pKa = 11.35SKK55 pKa = 11.12

Molecular weight: 6.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

210

0

210

53288

35

6064

253.8

28.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.908 ± 0.212

0.878 ± 0.088

6.748 ± 0.125

5.893 ± 0.27

4.335 ± 0.106

7.936 ± 0.325

1.315 ± 0.107

6.45 ± 0.197

5.536 ± 0.365

7.264 ± 0.152

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.044 ± 0.207

5.802 ± 0.131

3.894 ± 0.13

3.639 ± 0.099

3.86 ± 0.167

7.677 ± 0.209

7.809 ± 0.37

6.746 ± 0.195

1.145 ± 0.088

4.121 ± 0.126
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski